Simulation of muscle growth with coupled signaling-mechanics model#
This demo integrates the IGF1-AKT-mTOR-FOXO signaling model with 3D hyperelastic tissue mechanics to simulate exercise-induced hypertrophy.
The coupling works in two directions:
Signaling \(\to\) Mechanics: The net protein balance (\(N\)) from the signaling model drives a volumetric growth tensor (\(\mathbf{G}\)), which expands the tissue perpendicular to the muscle fibers.
Mechanics \(\to\) Signaling: The change in muscle Cross-Sectional Area (CSA) modulates the protein synthesis rate (\(k_M\)), creating a homeostatic loop that limits unbounded growth.
We will simulate a 15-day training protocol on an idealized fusiform muscle geometry to keep run time reasonable.
from pathlib import Path
import pandas as pd
import matplotlib.pyplot as plt
import dolfinx
import pyvista as pv
from musclex.geometry import IdealizedFusiform
from musclex.material import MuscleRohrle
from musclex.protocol import RegularExercise
from musclex.exercise_model import ExerciseModel
from musclex.muscle_growth import MuscleGrowthModel
from musclex.postprocess_growth import postprocess_from_file
# Set FEniCSx log level
dolfinx.log.set_log_level(dolfinx.log.LogLevel.WARNING)
Setup#
We define the input mesh paths and configuration files for the material properties and signaling parameters.
root_dir = Path("..")
results_dir = root_dir / "results/demos/coupled_growth"
results_dir.mkdir(parents=True, exist_ok=True)
mesh_path = root_dir / "meshes/muscle-idealized/muscle-idealized.xdmf"
material_config = root_dir / "config_files/material_rohrle.yml"
exercise_config = root_dir / "config_files/exercise_eq_reduced_k1.yml"
Load geometry and fiber architecture#
We use an idealized fusiform muscle. The fiber direction dictates the orientation of growth, with the muscle expanding perpendicular to the fibers.
geometry = IdealizedFusiform(mesh_path)
geometry.info()
No fiber orientation file provided. Calculating analytical fiber direction.
--- Geometry info ---
Geometry type: idealized_fusiform
Mesh dimension: 3
Number of cells: 1997
Mesh size h_max: 1.88e-02, h_min: 7.19e-03
Volume: 2.39e-04 m^3
# Visualize geometry
pv.set_jupyter_backend("static")
plotter = geometry.plot(mode="all")
2026-01-09 15:01:29.501 ( 1.638s) [ 7F9217887140]vtkXOpenGLRenderWindow.:1458 WARN| bad X server connection. DISPLAY=:99.0
Initialize material and signaling models#
We initialize the two sub-models independently before coupling them:
Material Model: Transversely isotropic hyperelasticity with tendon-like (Robin) boundary conditions.
Exercise Model: Modeling the IGF1-AKT-mTOR-FOXO signaling pathway. The exercise protocol consists of 1h exercise bouts every 2 days for 15 days.
print(f"Initializing material model...")
material_model = MuscleRohrle(
geometry.domain, # mesh
geometry.ft, # facet tags for BCs
material_config, # material configuration file
geometry.fibers, # fiber orientation field
results_dir, # output directory
clamp_type="robin", # spring-like BC at ends
)
print(f"Initializing signaling model...")
# Protocol: 1 hour exercise bout every 2 days (48h cycle) for 15 days
protocol = RegularExercise(
N=7, exercise_duration=1, growth_duration=47, end_time=15 * 24, intensity=0.8
)
exercise_model = ExerciseModel(protocol, exercise_config, results_dir)
Initializing material model...
Setting up FEM...
dofs: 11303
Setup FEM finished in 0.02 seconds.
Initializing signaling model...
Configure coupled growth model#
The MuscleGrowthModel class manages the model coupling. At each step, it:
Advances the ODEs (Signaling)
Updates the growth tensor \(\mathbf{G}\).
Solves for mechanical equilibrium (hyperelasticity).
Computes the new CSA and updates \(k_M\) via feedback.
print("Initializing coupled growth model...")
coupled_model = MuscleGrowthModel(
exercise_model, material_model, results_dir, geometry.compute_csa
)
Initializing coupled growth model...
Using Hill feedback function
Run simulation#
This process iterates through the exercise and rest periods defined in the protocol.
Note: This may take a few (5-10) minutes
print(f"Starting simulation for {protocol.events[-1].end_time/24:.1f} days...")
coupled_model.simulate()
# Save signaling states
coupled_model.exercise_model.assemble_solution()
ode_df = coupled_model.exercise_model.solution_dataframe()
ode_df.to_csv(results_dir / "ode_results.csv")
print("Simulation complete.")
Starting simulation for 15.0 days...
======================================================================
Processing event from t=0 to 1
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=1 to 48
At growth time 1.00, growth rate is 1.0
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.095855802384e+01
Iteration 0 residual: 20.958558023838446
Residual norms for tmp_ solve.
0 KSP Residual norm 2.095855802384e+01
1 KSP Residual norm 1.620162246723e-14
1 SNES Function norm 2.304003688100e-14
Iteration 1 residual: 2.3040036880999438e-14
F_reac = 6.242128419127061e-16
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 6.20 seconds.
CSA at time 2.0 is 0.0019134171618254501
Output written for time 2.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 2.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 2.00, growth rate is 1.0
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.296793235877e-14
Iteration 0 residual: 2.2967932358766893e-14
F_reac = 5.741863601543699e-16
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 0.07 seconds.
CSA at time 3.0 is 0.0019134171618254501
At growth time 3.00, growth rate is 1.0000000169985968
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.274567704815e-07
Iteration 0 residual: 1.274567704814603e-07
Residual norms for tmp_ solve.
0 KSP Residual norm 1.274567704815e-07
1 KSP Residual norm 1.503761719781e-21
1 SNES Function norm 6.079029587678e-15
Iteration 1 residual: 6.079029587678419e-15
F_reac = -9.072894116205582e-09
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 4.0 is 0.001913417194303091
At growth time 4.00, growth rate is 1.0000002133257726
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.599532365841e-06
Iteration 0 residual: 1.5995323658409827e-06
Residual norms for tmp_ solve.
0 KSP Residual norm 1.599532365841e-06
1 KSP Residual norm 1.977282926325e-20
1 SNES Function norm 2.453786028846e-13
Iteration 1 residual: 2.453786028845858e-13
F_reac = -1.229338368063627e-07
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 5.0 is 0.0019134176018849028
At growth time 5.00, growth rate is 1.0000005085125174
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.812862419006e-06
Iteration 0 residual: 3.8128624190064236e-06
Residual norms for tmp_ solve.
0 KSP Residual norm 3.812862419006e-06
1 KSP Residual norm 4.689094964777e-20
1 SNES Function norm 1.396357048324e-12
Iteration 1 residual: 1.396357048324434e-12
F_reac = -3.943476185427759e-07
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 6.0 is 0.0019134185734529703
At growth time 6.00, growth rate is 1.0000009121185525
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 6.839123559180e-06
Iteration 0 residual: 6.8391235591797835e-06
Residual norms for tmp_ solve.
0 KSP Residual norm 6.839123559180e-06
1 KSP Residual norm 8.580426002189e-20
1 SNES Function norm 4.491347213781e-12
Iteration 1 residual: 4.491347213781032e-12
F_reac = -8.811810423132029e-07
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.18 seconds.
CSA at time 7.0 is 0.0019134203161549636
At growth time 7.00, growth rate is 1.0000014297633888
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.072044698781e-05
Iteration 0 residual: 1.0720446987808396e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 1.072044698781e-05
1 KSP Residual norm 1.380649788366e-19
1 SNES Function norm 1.103567471613e-11
Iteration 1 residual: 1.1035674716133385e-11
F_reac = -1.6442998653069418e-06
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 8.0 is 0.001913423047876563
At growth time 8.00, growth rate is 1.0000020628318798
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.546721058456e-05
Iteration 0 residual: 1.54672105845566e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 1.546721058456e-05
1 KSP Residual norm 1.931441097605e-19
1 SNES Function norm 2.297177128315e-11
Iteration 1 residual: 2.2971771283153356e-11
F_reac = -2.7453087681291283e-06
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 9.0 is 0.0019134269891516776
At growth time 9.00, growth rate is 1.0000028076544967
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.105189281141e-05
Iteration 0 residual: 2.1051892811405375e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 2.105189281141e-05
1 KSP Residual norm 2.677054357774e-19
1 SNES Function norm 4.255511803583e-11
Iteration 1 residual: 4.2555118035826497e-11
F_reac = -4.243853987839965e-06
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 10.0 is 0.0019134323535066355
At growth time 10.00, growth rate is 1.0000036542065265
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.739931982911e-05
Iteration 0 residual: 2.739931982911157e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 2.739931982911e-05
1 KSP Residual norm 3.489569975345e-19
1 SNES Function norm 7.208598819520e-11
Iteration 1 residual: 7.208598819519912e-11
F_reac = -6.194231868692394e-06
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 11.0 is 0.0019134393353191137
At growth time 11.00, growth rate is 1.0000045843367444
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.437338518307e-05
Iteration 0 residual: 3.4373385183073165e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 3.437338518307e-05
1 KSP Residual norm 4.205896389435e-19
1 SNES Function norm 1.134532653520e-10
Iteration 1 residual: 1.1345326535199254e-10
F_reac = -8.641052210933177e-06
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 12.0 is 0.0019134480942926229
Output written for time 12.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 12.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 12.00, growth rate is 1.000005560411538
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.169190566309e-05
Iteration 0 residual: 4.169190566309318e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 4.169190566309e-05
1 KSP Residual norm 5.069709537603e-19
1 SNES Function norm 1.669077947991e-10
Iteration 1 residual: 1.66907794799085e-10
F_reac = -1.1608841428008291e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.18 seconds.
CSA at time 13.0 is 0.001913458718233412
At growth time 13.00, growth rate is 1.000006762751148
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.070690390540e-05
Iteration 0 residual: 5.070690390540252e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 5.070690390540e-05
1 KSP Residual norm 6.252015578168e-19
1 SNES Function norm 2.468931243983e-10
Iteration 1 residual: 2.468931243983349e-10
F_reac = -1.5218353620360974e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 14.0 is 0.0019134716394850302
At growth time 14.00, growth rate is 1.0000091278436274
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 6.844001612285e-05
Iteration 0 residual: 6.844001612285456e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 6.844001612285e-05
1 KSP Residual norm 8.494007191616e-19
1 SNES Function norm 4.497783002989e-10
Iteration 1 residual: 4.497783002989294e-10
F_reac = -2.0090085833788623e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 15.0 is 0.0019134890797299952
At growth time 15.00, growth rate is 1.0000112586154823
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 8.441597050192e-05
Iteration 0 residual: 8.441597050191726e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 8.441597050192e-05
1 KSP Residual norm 1.000161676582e-18
1 SNES Function norm 6.842738202811e-10
Iteration 1 residual: 6.842738202811009e-10
F_reac = -2.6099112645167633e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 16.0 is 0.0019135105913589256
At growth time 16.00, growth rate is 1.0000128020337888
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 9.598792683116e-05
Iteration 0 residual: 9.59879268311599e-05
Residual norms for tmp_ solve.
0 KSP Residual norm 9.598792683116e-05
1 KSP Residual norm 1.220889861278e-18
1 SNES Function norm 8.847402229671e-10
Iteration 1 residual: 8.847402229670683e-10
F_reac = -3.293204161462332e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 17.0 is 0.0019135350522360192
At growth time 17.00, growth rate is 1.0000138140575554
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.035755828859e-04
Iteration 0 residual: 0.00010357558288590446
Residual norms for tmp_ solve.
0 KSP Residual norm 1.035755828859e-04
1 KSP Residual norm 1.314079543554e-18
1 SNES Function norm 1.030146463228e-09
Iteration 1 residual: 1.0301464632283519e-09
F_reac = -4.030528230236159e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 18.0 is 0.0019135614471185686
At growth time 18.00, growth rate is 1.0000144889356715
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.086354297315e-04
Iteration 0 residual: 0.00010863542973145499
Residual norms for tmp_ solve.
0 KSP Residual norm 1.086354297315e-04
1 KSP Residual norm 1.341763167286e-18
1 SNES Function norm 1.133256689880e-09
Iteration 1 residual: 1.1332566898795848e-09
F_reac = -4.80388738688111e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 19.0 is 0.0019135891318846838
At growth time 19.00, growth rate is 1.000014952573923
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.121114818679e-04
Iteration 0 residual: 0.00011211148186793882
Residual norms for tmp_ solve.
0 KSP Residual norm 1.121114818679e-04
1 KSP Residual norm 1.380026005802e-18
1 SNES Function norm 1.206942187109e-09
Iteration 1 residual: 1.2069421871093723e-09
F_reac = -5.602005456880415e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 20.0 is 0.0019136177029583034
At growth time 20.00, growth rate is 1.0000152786834957
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.145564018443e-04
Iteration 0 residual: 0.0001145564018443216
Residual norms for tmp_ solve.
0 KSP Residual norm 1.145564018443e-04
1 KSP Residual norm 1.409794014006e-18
1 SNES Function norm 1.260160900615e-09
Iteration 1 residual: 1.260160900615081e-09
F_reac = -6.417540948994468e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 21.0 is 0.001913646897588945
At growth time 21.00, growth rate is 1.0000155123679766
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.163083594689e-04
Iteration 0 residual: 0.00011630835946888996
Residual norms for tmp_ solve.
0 KSP Residual norm 1.163083594689e-04
1 KSP Residual norm 1.385280502120e-18
1 SNES Function norm 1.299002214121e-09
Iteration 1 residual: 1.299002214121269e-09
F_reac = -7.24556004767876e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 22.0 is 0.0019136765391964217
Output written for time 22.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 22.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 22.00, growth rate is 1.0000156821626478
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.175813006443e-04
Iteration 0 residual: 0.00011758130064426767
Residual norms for tmp_ solve.
0 KSP Residual norm 1.175813006443e-04
1 KSP Residual norm 1.420332128112e-18
1 SNES Function norm 1.327594331625e-09
Iteration 1 residual: 1.3275943316249467e-09
F_reac = -8.082652198967372e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 23.0 is 0.0019137065057169788
At growth time 23.00, growth rate is 1.0000158066117562
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.185142621511e-04
Iteration 0 residual: 0.0001185142621511176
Residual norms for tmp_ solve.
0 KSP Residual norm 1.185142621511e-04
1 KSP Residual norm 1.403256629163e-18
1 SNES Function norm 1.348748078726e-09
Iteration 1 residual: 1.3487480787262037e-09
F_reac = -8.926396775716157e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 24.0 is 0.0019137367105154922
At growth time 24.00, growth rate is 1.0000158980501894
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.191997254812e-04
Iteration 0 residual: 0.00011919972548115087
Residual norms for tmp_ solve.
0 KSP Residual norm 1.191997254812e-04
1 KSP Residual norm 1.451999355858e-18
1 SNES Function norm 1.364397132470e-09
Iteration 1 residual: 1.3643971324698275e-09
F_reac = -9.775031610522377e-05
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 25.0 is 0.00191376709052246
At growth time 25.00, growth rate is 1.0000159648614138
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.197005460500e-04
Iteration 0 residual: 0.00011970054604999933
Residual norms for tmp_ solve.
0 KSP Residual norm 1.197005460500e-04
1 KSP Residual norm 1.438777114244e-18
1 SNES Function norm 1.375888502830e-09
Iteration 1 residual: 1.3758885028297657e-09
F_reac = -0.00010627242058474829
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 26.0 is 0.0019137975986848314
At growth time 26.00, growth rate is 1.0000160128641016
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.200603495894e-04
Iteration 0 residual: 0.0001200603495894273
Residual norms for tmp_ solve.
0 KSP Residual norm 1.200603495894e-04
1 KSP Residual norm 1.454281235918e-18
1 SNES Function norm 1.384174640991e-09
Iteration 1 residual: 1.3841746409910732e-09
F_reac = -0.00011482024081837436
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 27.0 is 0.0019138281990659465
At growth time 27.00, growth rate is 1.0000160461823389
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.203100565855e-04
Iteration 0 residual: 0.00012031005658548833
Residual norms for tmp_ solve.
0 KSP Residual norm 1.203100565855e-04
1 KSP Residual norm 1.432262652388e-18
1 SNES Function norm 1.389940226658e-09
Iteration 1 residual: 1.389940226658456e-09
F_reac = -0.00012338593788369258
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 28.0 is 0.0019138588636080508
At growth time 28.00, growth rate is 1.000016067801441
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.204720495580e-04
Iteration 0 residual: 0.00012047204955803528
Residual norms for tmp_ solve.
0 KSP Residual norm 1.204720495580e-04
1 KSP Residual norm 1.421235709173e-18
1 SNES Function norm 1.393687894141e-09
Iteration 1 residual: 1.393687894141396e-09
F_reac = -0.00013196326641277947
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 29.0 is 0.001913889569956652
At growth time 29.00, growth rate is 1.0000160799284186
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.205628756608e-04
Iteration 0 residual: 0.00012056287566082864
Residual norms for tmp_ solve.
0 KSP Residual norm 1.205628756608e-04
1 KSP Residual norm 1.408355944724e-18
1 SNES Function norm 1.395792316130e-09
Iteration 1 residual: 1.3957923161295216e-09
F_reac = -0.0001405471591109795
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 30.0 is 0.001913920299973588
At growth time 30.00, growth rate is 1.000016084229077
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.205950243380e-04
Iteration 0 residual: 0.00012059502433803467
Residual norms for tmp_ solve.
0 KSP Residual norm 1.205950243380e-04
1 KSP Residual norm 1.480305505172e-18
1 SNES Function norm 1.396538760310e-09
Iteration 1 residual: 1.3965387603100507e-09
F_reac = -0.0001491334378583299
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 31.0 is 0.0019139510387030723
At growth time 31.00, growth rate is 1.0000160819861341
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.205781128275e-04
Iteration 0 residual: 0.00012057811282746395
Residual norms for tmp_ solve.
0 KSP Residual norm 1.205781128275e-04
1 KSP Residual norm 1.476245990930e-18
1 SNES Function norm 1.396148902786e-09
Iteration 1 residual: 1.3961489027856708e-09
F_reac = -0.00015771860921220618
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 32.0 is 0.0019139817736397778
Output written for time 32.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 32.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 32.00, growth rate is 1.0000160742061581
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.205196879262e-04
Iteration 0 residual: 0.00012051968792619344
Residual norms for tmp_ solve.
0 KSP Residual norm 1.205196879262e-04
1 KSP Residual norm 1.419151823121e-18
1 SNES Function norm 1.394798293815e-09
Iteration 1 residual: 1.3947982938150989e-09
F_reac = -0.00016629971699799054
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 33.0 is 0.0019140124942013228
At growth time 33.00, growth rate is 1.0000160616929452
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.204257761400e-04
Iteration 0 residual: 0.00012042577614002454
Residual norms for tmp_ solve.
0 KSP Residual norm 1.204257761400e-04
1 KSP Residual norm 1.497144453656e-18
1 SNES Function norm 1.392627584031e-09
Iteration 1 residual: 1.3926275840305386e-09
F_reac = -0.0001748742340698579
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 34.0 is 0.0019140431913408367
At growth time 34.00, growth rate is 1.0000160450986393
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.203012669532e-04
Iteration 0 residual: 0.0001203012669531976
Residual norms for tmp_ solve.
0 KSP Residual norm 1.203012669532e-04
1 KSP Residual norm 1.442670385165e-18
1 SNES Function norm 1.389751077552e-09
Iteration 1 residual: 1.3897510775515129e-09
F_reac = -0.00018343998136392852
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 35.0 is 0.0019140738572572635
At growth time 35.00, growth rate is 1.0000160249599104
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.201501840785e-04
Iteration 0 residual: 0.00012015018407848937
Residual norms for tmp_ solve.
0 KSP Residual norm 1.201501840785e-04
1 KSP Residual norm 1.487670248628e-18
1 SNES Function norm 1.386264685960e-09
Iteration 1 residual: 1.386264685960268e-09
F_reac = -0.00019199506625662004
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 36.0 is 0.0019141044851747836
At growth time 36.00, growth rate is 1.0000160017239772
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.199758805680e-04
Iteration 0 residual: 0.00011997588056801952
Residual norms for tmp_ solve.
0 KSP Residual norm 1.199758805680e-04
1 KSP Residual norm 1.427519051149e-18
1 SNES Function norm 1.382246989563e-09
Iteration 1 residual: 1.3822469895633414e-09
F_reac = -0.0002005378348279871
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 37.0 is 0.0019141350691718902
At growth time 37.00, growth rate is 1.0000159757676363
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.197811814758e-04
Iteration 0 residual: 0.00011978118147581891
Residual norms for tmp_ solve.
0 KSP Residual norm 1.197811814758e-04
1 KSP Residual norm 1.444439323872e-18
1 SNES Function norm 1.377766385317e-09
Iteration 1 residual: 1.377766385316984e-09
F_reac = -0.00020906683426298833
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 38.0 is 0.0019141656040468906
At growth time 38.00, growth rate is 1.0000159474114052
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.195684898988e-04
Iteration 0 residual: 0.0001195684898987629
Residual norms for tmp_ solve.
0 KSP Residual norm 1.195684898988e-04
1 KSP Residual norm 1.425793836864e-18
1 SNES Function norm 1.372879831152e-09
Iteration 1 residual: 1.3728798311515384e-09
F_reac = -0.00021758078281614748
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 39.0 is 0.0019141960852103776
At growth time 39.00, growth rate is 1.000015916930209
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.193398671030e-04
Iteration 0 residual: 0.00011933986710303041
Residual norms for tmp_ solve.
0 KSP Residual norm 1.193398671030e-04
1 KSP Residual norm 1.441390854378e-18
1 SNES Function norm 1.367636601172e-09
Iteration 1 residual: 1.367636601171927e-09
F_reac = -0.00022607854548440087
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 40.0 is 0.0019142265085981501
At growth time 40.00, growth rate is 1.000015884561578
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.190970939845e-04
Iteration 0 residual: 0.00011909709398449994
Residual norms for tmp_ solve.
0 KSP Residual norm 1.190970939845e-04
1 KSP Residual norm 1.534998097281e-18
1 SNES Function norm 1.362079280450e-09
Iteration 1 residual: 1.362079280450425e-09
F_reac = -0.0002345591140347671
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 41.0 is 0.0019142568705997677
At growth time 41.00, growth rate is 1.000015850512031
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.188417189281e-04
Iteration 0 residual: 0.00011884171892805551
Residual norms for tmp_ solve.
0 KSP Residual norm 1.188417189281e-04
1 KSP Residual norm 1.408199353623e-18
1 SNES Function norm 1.356246258915e-09
Iteration 1 residual: 1.3562462589151421e-09
F_reac = -0.00024302159046641651
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 42.0 is 0.0019142871679993058
Output written for time 42.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 42.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 42.00, growth rate is 1.000015814962115
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.185750955984e-04
Iteration 0 residual: 0.00011857509559840396
Residual norms for tmp_ solve.
0 KSP Residual norm 1.185750955984e-04
1 KSP Residual norm 1.414444420933e-18
1 SNES Function norm 1.350169495295e-09
Iteration 1 residual: 1.350169495295186e-09
F_reac = -0.00025146517313986603
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 43.0 is 0.001914317397925763
At growth time 43.00, growth rate is 1.0000157780704364
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.182984131484e-04
Iteration 0 residual: 0.00011829841314837642
Residual norms for tmp_ solve.
0 KSP Residual norm 1.182984131484e-04
1 KSP Residual norm 1.473734375211e-18
1 SNES Function norm 1.343877578283e-09
Iteration 1 residual: 1.343877578282947e-09
F_reac = -0.0002598891450734255
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 44.0 is 0.0019143475578111448
At growth time 44.00, growth rate is 1.00001573997692
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.180127206731e-04
Iteration 0 residual: 0.00011801272067311775
Residual norms for tmp_ solve.
0 KSP Residual norm 1.180127206731e-04
1 KSP Residual norm 1.498774158857e-18
1 SNES Function norm 1.337396264583e-09
Iteration 1 residual: 1.3373962645826563e-09
F_reac = -0.000268292863964333
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 45.0 is 0.0019143776453547639
At growth time 45.00, growth rate is 1.0000157008054769
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.177189471976e-04
Iteration 0 residual: 0.00011771894719755893
Residual norms for tmp_ solve.
0 KSP Residual norm 1.177189471976e-04
1 KSP Residual norm 1.423677031594e-18
1 SNES Function norm 1.330747833852e-09
Iteration 1 residual: 1.3307478338516766e-09
F_reac = -0.00027667575364812296
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 46.0 is 0.0019144076584926698
At growth time 46.00, growth rate is 1.0000156606662045
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.174179181792e-04
Iteration 0 residual: 0.00011741791817920197
Residual norms for tmp_ solve.
0 KSP Residual norm 1.174179181792e-04
1 KSP Residual norm 1.436894147768e-18
1 SNES Function norm 1.323952227846e-09
Iteration 1 residual: 1.3239522278462624e-09
F_reac = -0.00028503729672912714
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 47.0 is 0.0019144375953712304
At growth time 47.00, growth rate is 1.0000156196572219
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.171103692725e-04
Iteration 0 residual: 0.00011711036927248794
Residual norms for tmp_ solve.
0 KSP Residual norm 1.171103692725e-04
1 KSP Residual norm 1.421292613454e-18
1 SNES Function norm 1.317027483895e-09
Iteration 1 residual: 1.3170274838947072e-09
F_reac = -0.00029337702817791236
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 48.0 is 0.0019144674543243154
Output written for time 48.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 48.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9145e-03. Feedback scalar: 0.999
======================================================================
Processing event from t=48 to 49
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=49 to 96
At growth time 49.00, growth rate is 1.0000155250431215
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.164009148342e-04
Iteration 0 residual: 0.00011640091483418537
Residual norms for tmp_ solve.
0 KSP Residual norm 1.164009148342e-04
1 KSP Residual norm 1.445693963659e-18
1 SNES Function norm 1.301120298513e-09
Iteration 1 residual: 1.3011202985127192e-09
F_reac = -0.0003016663381516472
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 50.0 is 0.001914497132872611
Output written for time 50.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 50.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 50.00, growth rate is 1.000015527677219
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.164205922045e-04
Iteration 0 residual: 0.00011642059220451818
Residual norms for tmp_ solve.
0 KSP Residual norm 1.164205922045e-04
1 KSP Residual norm 1.509178362631e-18
1 SNES Function norm 1.301562081842e-09
Iteration 1 residual: 1.3015620818419999e-09
F_reac = -0.0003099571145895174
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 51.0 is 0.00191452681691874
At growth time 51.00, growth rate is 1.0000155955807282
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.169296123823e-04
Iteration 0 residual: 0.00011692961238230715
Residual norms for tmp_ solve.
0 KSP Residual norm 1.169296123823e-04
1 KSP Residual norm 1.402775272440e-18
1 SNES Function norm 1.312970436704e-09
Iteration 1 residual: 1.3129704367035233e-09
F_reac = -0.0003182842147540074
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 52.0 is 0.0019145566312388656
At growth time 52.00, growth rate is 1.0000157481454763
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.180733694478e-04
Iteration 0 residual: 0.00011807336944780401
Residual norms for tmp_ solve.
0 KSP Residual norm 1.180733694478e-04
1 KSP Residual norm 1.376734341839e-18
1 SNES Function norm 1.338784486817e-09
Iteration 1 residual: 1.3387844868173942e-09
F_reac = -0.0003266928394616596
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 53.0 is 0.0019145867376902106
At growth time 53.00, growth rate is 1.000015999261584
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.199559984375e-04
Iteration 0 residual: 0.00011995599843745283
Residual norms for tmp_ solve.
0 KSP Residual norm 1.199559984375e-04
1 KSP Residual norm 1.644638802103e-18
1 SNES Function norm 1.381820540626e-09
Iteration 1 residual: 1.381820540625983e-09
F_reac = -0.00033523560879465794
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 54.0 is 0.0019146173246949282
At growth time 54.00, growth rate is 1.0000163585268966
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.226494523809e-04
Iteration 0 residual: 0.0001226494523808939
Residual norms for tmp_ solve.
0 KSP Residual norm 1.226494523809e-04
1 KSP Residual norm 1.508388906148e-18
1 SNES Function norm 1.444574423227e-09
Iteration 1 residual: 1.4445744232271686e-09
F_reac = -0.00034397027027570115
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 55.0 is 0.0019146485990365475
At growth time 55.00, growth rate is 1.0000168315899256
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.261960731777e-04
Iteration 0 residual: 0.00012619607317769933
Residual norms for tmp_ solve.
0 KSP Residual norm 1.261960731777e-04
1 KSP Residual norm 1.508837322408e-18
1 SNES Function norm 1.529331144104e-09
Iteration 1 residual: 1.5293311441043174e-09
F_reac = -0.00035295759026790025
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 56.0 is 0.0019146807783115085
At growth time 56.00, growth rate is 1.000017419856184
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.306063898693e-04
Iteration 0 residual: 0.00013060638986929398
Residual norms for tmp_ solve.
0 KSP Residual norm 1.306063898693e-04
1 KSP Residual norm 1.567388803674e-18
1 SNES Function norm 1.638098564981e-09
Iteration 1 residual: 1.6380985649814456e-09
F_reac = -0.0003622590887449625
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 57.0 is 0.001914714082818812
At growth time 57.00, growth rate is 1.0000181196679716
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.358529694875e-04
Iteration 0 residual: 0.0001358529694874805
Residual norms for tmp_ solve.
0 KSP Residual norm 1.358529694875e-04
1 KSP Residual norm 1.792068145596e-18
1 SNES Function norm 1.772355936064e-09
Iteration 1 residual: 1.7723559360639491e-09
F_reac = -0.0003719343362477139
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 58.0 is 0.00191474872588092
At growth time 58.00, growth rate is 1.0000189210023434
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.418606559933e-04
Iteration 0 residual: 0.00014186065599327833
Residual norms for tmp_ solve.
0 KSP Residual norm 1.418606559933e-04
1 KSP Residual norm 1.723648205336e-18
1 SNES Function norm 1.932583117911e-09
Iteration 1 residual: 1.93258311791114e-09
F_reac = -0.00038203755574739315
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 59.0 is 0.0019147849016744537
At growth time 59.00, growth rate is 1.0000198056980858
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.484932786577e-04
Iteration 0 residual: 0.00014849327865766503
Residual norms for tmp_ solve.
0 KSP Residual norm 1.484932786577e-04
1 KSP Residual norm 1.929459039076e-18
1 SNES Function norm 2.117529769315e-09
Iteration 1 residual: 2.1175297693152055e-09
F_reac = -0.0003926132778779156
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 60.0 is 0.0019148227696696792
Output written for time 60.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 60.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 60.00, growth rate is 1.0000207452124703
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.555368357914e-04
Iteration 0 residual: 0.00015553683579136421
Residual norms for tmp_ solve.
0 KSP Residual norm 1.555368357914e-04
1 KSP Residual norm 1.835013793247e-18
1 SNES Function norm 2.323187854764e-09
Iteration 1 residual: 2.32318785476373e-09
F_reac = -0.0004036907983922881
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 61.0 is 0.0019148624347789182
At growth time 61.00, growth rate is 1.00002192028383
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.643463793178e-04
Iteration 0 residual: 0.00016434637931778424
Residual norms for tmp_ solve.
0 KSP Residual norm 1.643463793178e-04
1 KSP Residual norm 2.088968434300e-18
1 SNES Function norm 2.593822521879e-09
Iteration 1 residual: 2.5938225218787324e-09
F_reac = -0.0004153958632683322
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 62.0 is 0.0019149043475143806
At growth time 62.00, growth rate is 1.0000242267828603
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.816384263570e-04
Iteration 0 residual: 0.00018163842635698436
Residual norms for tmp_ solve.
0 KSP Residual norm 1.816384263570e-04
1 KSP Residual norm 2.226710118955e-18
1 SNES Function norm 3.168394906176e-09
Iteration 1 residual: 3.1683949061755526e-09
F_reac = -0.0004283323596444224
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 63.0 is 0.0019149506714441651
At growth time 63.00, growth rate is 1.0000262886007534
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 1.970955720549e-04
Iteration 0 residual: 0.000197095572054913
Residual norms for tmp_ solve.
0 KSP Residual norm 1.970955720549e-04
1 KSP Residual norm 2.307655998187e-18
1 SNES Function norm 3.730614508511e-09
Iteration 1 residual: 3.730614508510902e-09
F_reac = -0.0004423701109613465
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 64.0 is 0.001915000938976574
At growth time 64.00, growth rate is 1.0000277670809017
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.081792021764e-04
Iteration 0 residual: 0.0002081792021764342
Residual norms for tmp_ solve.
0 KSP Residual norm 2.081792021764e-04
1 KSP Residual norm 2.572647283556e-18
1 SNES Function norm 4.162016176515e-09
Iteration 1 residual: 4.162016176515445e-09
F_reac = -0.00045719781909792795
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 65.0 is 0.0019150540349478545
At growth time 65.00, growth rate is 1.000028719560691
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.153193762974e-04
Iteration 0 residual: 0.00021531937629743907
Residual norms for tmp_ solve.
0 KSP Residual norm 2.153193762974e-04
1 KSP Residual norm 2.657897768289e-18
1 SNES Function norm 4.452432181680e-09
Iteration 1 residual: 4.452432181679685e-09
F_reac = -0.0004725346383551692
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 66.0 is 0.0019151089537477193
At growth time 66.00, growth rate is 1.000029338880251
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.199619019707e-04
Iteration 0 residual: 0.0002199619019707067
Residual norms for tmp_ solve.
0 KSP Residual norm 2.199619019707e-04
1 KSP Residual norm 2.618713489496e-18
1 SNES Function norm 4.646519598267e-09
Iteration 1 residual: 4.646519598266919e-09
F_reac = -0.000488202614119388
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 67.0 is 0.0019151650584351015
At growth time 67.00, growth rate is 1.0000297491781849
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.230374407633e-04
Iteration 0 residual: 0.00022303744076330553
Residual norms for tmp_ solve.
0 KSP Residual norm 2.230374407633e-04
1 KSP Residual norm 2.764859361443e-18
1 SNES Function norm 4.777381491978e-09
Iteration 1 residual: 4.777381491978482e-09
F_reac = -0.0005040900911100605
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 68.0 is 0.0019152219493941646
At growth time 68.00, growth rate is 1.000030023261517
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.250918141154e-04
Iteration 0 residual: 0.00022509181411539222
Residual norms for tmp_ solve.
0 KSP Residual norm 2.250918141154e-04
1 KSP Residual norm 2.771111651222e-18
1 SNES Function norm 4.865810840179e-09
Iteration 1 residual: 4.8658108401789926e-09
F_reac = -0.0005201243063501078
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 69.0 is 0.0019152793661988445
At growth time 69.00, growth rate is 1.000030205738266
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.264594387677e-04
Iteration 0 residual: 0.00022645943876771257
Residual norms for tmp_ solve.
0 KSP Residual norm 2.264594387677e-04
1 KSP Residual norm 2.719088429433e-18
1 SNES Function norm 4.925133512932e-09
Iteration 1 residual: 4.925133512932271e-09
F_reac = -0.000536256325491077
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 70.0 is 0.0019153371337031523
Output written for time 70.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 70.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 70.00, growth rate is 1.0000303248584657
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.273520984553e-04
Iteration 0 residual: 0.00022735209845528765
Residual norms for tmp_ solve.
0 KSP Residual norm 2.273520984553e-04
1 KSP Residual norm 2.807372138473e-18
1 SNES Function norm 4.964052626104e-09
Iteration 1 residual: 4.9640526261044735e-09
F_reac = -0.0005524523046751003
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 71.0 is 0.0019153951307687256
At growth time 71.00, growth rate is 1.0000303989963804
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.279075403296e-04
Iteration 0 residual: 0.0002279075403296455
Residual norms for tmp_ solve.
0 KSP Residual norm 2.279075403296e-04
1 KSP Residual norm 2.695444278884e-18
1 SNES Function norm 4.988351762378e-09
Iteration 1 residual: 4.988351762378498e-09
F_reac = -0.0005686882149900361
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 72.0 is 0.0019154532713845961
At growth time 72.00, growth rate is 1.000030440383056
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.282174573034e-04
Iteration 0 residual: 0.0002282174573033685
Residual norms for tmp_ solve.
0 KSP Residual norm 2.282174573034e-04
1 KSP Residual norm 2.748863457784e-18
1 SNES Function norm 5.001941947907e-09
Iteration 1 residual: 5.0019419479069894e-09
F_reac = -0.0005849465608761894
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 73.0 is 0.001915511492922813
At growth time 73.00, growth rate is 1.0000304573373626
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.283442137070e-04
Iteration 0 residual: 0.00022834421370699539
Residual norms for tmp_ solve.
0 KSP Residual norm 2.283442137070e-04
1 KSP Residual norm 2.754125390830e-18
1 SNES Function norm 5.007513408734e-09
Iteration 1 residual: 5.007513408734206e-09
F_reac = -0.0006012142903050327
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 74.0 is 0.0019155697486591976
At growth time 74.00, growth rate is 1.0000304556372495
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.283311252797e-04
Iteration 0 residual: 0.00022833112527967763
Residual norms for tmp_ solve.
0 KSP Residual norm 2.283311252797e-04
1 KSP Residual norm 2.754451214795e-18
1 SNES Function norm 5.006952718042e-09
Iteration 1 residual: 5.006952718042199e-09
F_reac = -0.0006174814374670151
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 75.0 is 0.001915628002915594
At growth time 75.00, growth rate is 1.0000304393808763
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.282089148394e-04
Iteration 0 residual: 0.00022820891483938684
Residual norms for tmp_ solve.
0 KSP Residual norm 2.282089148394e-04
1 KSP Residual norm 2.789711114630e-18
1 SNES Function norm 5.001608126024e-09
Iteration 1 residual: 5.00160812602351e-09
F_reac = -0.0006337402254879088
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 76.0 is 0.0019156862278484794
At growth time 76.00, growth rate is 1.0000304115369456
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.279998379855e-04
Iteration 0 residual: 0.00022799983798549937
Residual norms for tmp_ solve.
0 KSP Residual norm 2.279998379855e-04
1 KSP Residual norm 2.883047387828e-18
1 SNES Function norm 4.992460453299e-09
Iteration 1 residual: 4.9924604532988555e-09
F_reac = -0.0006499844630965991
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 77.0 is 0.0019157444012896374
At growth time 77.00, growth rate is 1.0000303743017889
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.277203600659e-04
Iteration 0 residual: 0.00022772036006585034
Residual norms for tmp_ solve.
0 KSP Residual norm 2.277203600659e-04
1 KSP Residual norm 2.755423328137e-18
1 SNES Function norm 4.980241769882e-09
Iteration 1 residual: 4.980241769882454e-09
F_reac = -0.0006662091320695675
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 78.0 is 0.0019158025052695847
At growth time 78.00, growth rate is 1.0000303293343593
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.273829178541e-04
Iteration 0 residual: 0.00022738291785408694
Residual norms for tmp_ solve.
0 KSP Residual norm 2.273829178541e-04
1 KSP Residual norm 2.844106822987e-18
1 SNES Function norm 4.965505855710e-09
Iteration 1 residual: 4.965505855709722e-09
F_reac = -0.0006824101001866993
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 79.0 is 0.0019158605249901882
At growth time 79.00, growth rate is 1.0000302779130152
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.269970949077e-04
Iteration 0 residual: 0.00022699709490766787
Residual norms for tmp_ solve.
0 KSP Residual norm 2.269970949077e-04
1 KSP Residual norm 2.951043722091e-18
1 SNES Function norm 4.948681875356e-09
Iteration 1 residual: 4.948681875355667e-09
F_reac = -0.0006985839179503839
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 80.0 is 0.001915918448097076
Output written for time 80.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 80.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 80.00, growth rate is 1.0000302210416072
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.265704168663e-04
Iteration 0 residual: 0.0002265704168662976
Residual norms for tmp_ solve.
0 KSP Residual norm 2.265704168663e-04
1 KSP Residual norm 2.737733578484e-18
1 SNES Function norm 4.930108293912e-09
Iteration 1 residual: 4.930108293911672e-09
F_reac = -0.0007147276719623385
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 81.0 is 0.0019159762641548642
At growth time 81.00, growth rate is 1.0000301595223053
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.261088974227e-04
Iteration 0 residual: 0.00022610889742273143
Residual norms for tmp_ solve.
0 KSP Residual norm 2.261088974227e-04
1 KSP Residual norm 2.699492533907e-18
1 SNES Function norm 4.910056305260e-09
Iteration 1 residual: 4.9100563052596275e-09
F_reac = -0.0007308388772118339
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 82.0 is 0.0019160339642615835
At growth time 82.00, growth rate is 1.0000300940063611
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.256174188749e-04
Iteration 0 residual: 0.00022561741887493369
Residual norms for tmp_ solve.
0 KSP Residual norm 2.256174188749e-04
1 KSP Residual norm 2.760937464027e-18
1 SNES Function norm 4.888746207535e-09
Iteration 1 residual: 4.888746207534615e-09
F_reac = -0.0007469153964713413
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 83.0 is 0.001916091540760217
At growth time 83.00, growth rate is 1.0000300250300502
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.251000015710e-04
Iteration 0 residual: 0.00022510000157102263
Residual norms for tmp_ solve.
0 KSP Residual norm 2.251000015710e-04
1 KSP Residual norm 2.830618303723e-18
1 SNES Function norm 4.866361083569e-09
Iteration 1 residual: 4.866361083568572e-09
F_reac = -0.0007629553788885802
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 84.0 is 0.0019161489870188704
At growth time 84.00, growth rate is 1.000029953040538
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.245599978122e-04
Iteration 0 residual: 0.00022455999781222896
Residual norms for tmp_ solve.
0 KSP Residual norm 2.245599978122e-04
1 KSP Residual norm 2.733268011531e-18
1 SNES Function norm 4.843052732481e-09
Iteration 1 residual: 4.843052732480594e-09
F_reac = -0.0007789572124063265
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 85.0 is 0.0019162062972604673
At growth time 85.00, growth rate is 1.0000298784148032
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.240002337248e-04
Iteration 0 residual: 0.00022400023372480258
Residual norms for tmp_ solve.
0 KSP Residual norm 2.240002337248e-04
1 KSP Residual norm 2.612136648432e-18
1 SNES Function norm 4.818950023753e-09
Iteration 1 residual: 4.818950023753438e-09
F_reac = -0.0007949194862738951
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 86.0 is 0.0019162634664285647
At growth time 86.00, growth rate is 1.000029801473709
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.234231147569e-04
Iteration 0 residual: 0.0002234231147568748
Residual norms for tmp_ solve.
0 KSP Residual norm 2.234231147569e-04
1 KSP Residual norm 2.718725270957e-18
1 SNES Function norm 4.794162597273e-09
Iteration 1 residual: 4.794162597272994e-09
F_reac = -0.0008108409610890769
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 87.0 is 0.001916320490080093
At growth time 87.00, growth rate is 1.0000297224926409
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.228307054124e-04
Iteration 0 residual: 0.00022283070541237113
Residual norms for tmp_ solve.
0 KSP Residual norm 2.228307054124e-04
1 KSP Residual norm 2.834204062081e-18
1 SNES Function norm 4.768784470503e-09
Iteration 1 residual: 4.7687844705033344e-09
F_reac = -0.0008267205445024186
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 88.0 is 0.001916377364298463
At growth time 88.00, growth rate is 1.0000296417096695
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.222247904535e-04
Iteration 0 residual: 0.00022222479045347698
Residual norms for tmp_ solve.
0 KSP Residual norm 2.222247904535e-04
1 KSP Residual norm 2.680073868984e-18
1 SNES Function norm 4.742896971337e-09
Iteration 1 residual: 4.742896971337288e-09
F_reac = -0.0008425572713018894
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 89.0 is 0.0019164340856221956
At growth time 89.00, growth rate is 1.000029559331909
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.216069225650e-04
Iteration 0 residual: 0.0002216069225649561
Residual norms for tmp_ solve.
0 KSP Residual norm 2.216069225650e-04
1 KSP Residual norm 2.714990312203e-18
1 SNES Function norm 4.716571035175e-09
Iteration 1 residual: 4.716571035174532e-09
F_reac = -0.0008583502868807195
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 90.0 is 0.0019164906509857775
Output written for time 90.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 90.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 90.00, growth rate is 1.0000294755405414
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.209784600223e-04
Iteration 0 residual: 0.00022097846002234475
Residual norms for tmp_ solve.
0 KSP Residual norm 2.209784600223e-04
1 KSP Residual norm 2.673635033655e-18
1 SNES Function norm 4.689868571544e-09
Iteration 1 residual: 4.689868571544096e-09
F_reac = -0.0008740988333885549
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 91.0 is 0.0019165470576701052
At growth time 91.00, growth rate is 1.0000293904948325
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.203405967968e-04
Iteration 0 residual: 0.00022034059679679747
Residual norms for tmp_ solve.
0 KSP Residual norm 2.203405967968e-04
1 KSP Residual norm 2.767886391437e-18
1 SNES Function norm 4.662844078133e-09
Iteration 1 residual: 4.662844078132759e-09
F_reac = -0.0008898022380272098
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 92.0 is 0.001916603303260571
At growth time 92.00, growth rate is 1.000029304335384
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.196943869471e-04
Iteration 0 residual: 0.00021969438694713806
Residual norms for tmp_ solve.
0 KSP Residual norm 2.196943869471e-04
1 KSP Residual norm 2.591020717308e-18
1 SNES Function norm 4.635544952281e-09
Iteration 1 residual: 4.635544952280586e-09
F_reac = -0.0009054599030931058
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 93.0 is 0.00191665938561142
At growth time 93.00, growth rate is 1.000029217186793
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.190407645374e-04
Iteration 0 residual: 0.00021904076453744826
Residual norms for tmp_ solve.
0 KSP Residual norm 2.190407645374e-04
1 KSP Residual norm 2.547549850332e-18
1 SNES Function norm 4.608014157426e-09
Iteration 1 residual: 4.608014157425526e-09
F_reac = -0.0009210712974267611
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.18 seconds.
CSA at time 94.0 is 0.0019167153028151526
At growth time 94.00, growth rate is 1.0000291291598493
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.183805601256e-04
Iteration 0 residual: 0.00021838056012564607
Residual norms for tmp_ solve.
0 KSP Residual norm 2.183805601256e-04
1 KSP Residual norm 2.618550324156e-18
1 SNES Function norm 4.580289144335e-09
Iteration 1 residual: 4.580289144334837e-09
F_reac = -0.0009366359490369916
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 95.0 is 0.0019167710531760964
At growth time 95.00, growth rate is 1.000029040353364
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.177145144643e-04
Iteration 0 residual: 0.00021771451446433014
Residual norms for tmp_ solve.
0 KSP Residual norm 2.177145144643e-04
1 KSP Residual norm 2.589832478254e-18
1 SNES Function norm 4.552403461113e-09
Iteration 1 residual: 4.55240346111303e-09
F_reac = -0.0009521534387131826
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 96.0 is 0.0019168266351875856
Output written for time 96.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 96.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9168e-03. Feedback scalar: 0.996
======================================================================
Processing event from t=96 to 97
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=97 to 144
At growth time 97.00, growth rate is 1.0000287976643583
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.158948456003e-04
Iteration 0 residual: 0.00021589484560026448
Residual norms for tmp_ solve.
0 KSP Residual norm 2.158948456003e-04
1 KSP Residual norm 2.538107994507e-18
1 SNES Function norm 4.476630976561e-09
Iteration 1 residual: 4.476630976561463e-09
F_reac = -0.0009675416021955704
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 98.0 is 0.0019168817542960033
Output written for time 98.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 98.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 98.00, growth rate is 1.0000287529215424
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.155591917667e-04
Iteration 0 residual: 0.0002155591917666636
Residual norms for tmp_ solve.
0 KSP Residual norm 2.155591917667e-04
1 KSP Residual norm 2.592141465955e-18
1 SNES Function norm 4.462734805683e-09
Iteration 1 residual: 4.462734805682636e-09
F_reac = -0.000982906056665319
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 99.0 is 0.0019169367893567442
At growth time 99.00, growth rate is 1.0000287734768742
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.157130038162e-04
Iteration 0 residual: 0.00021571300381624463
Residual norms for tmp_ solve.
0 KSP Residual norm 2.157130038162e-04
1 KSP Residual norm 2.580470039660e-18
1 SNES Function norm 4.469116787741e-09
Iteration 1 residual: 4.469116787741404e-09
F_reac = -0.0009982817501830265
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 100.0 is 0.001916991865346247
At growth time 100.00, growth rate is 1.0000288786981615
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.165015160222e-04
Iteration 0 residual: 0.00021650151602215585
Residual norms for tmp_ solve.
0 KSP Residual norm 2.165015160222e-04
1 KSP Residual norm 2.626471735817e-18
1 SNES Function norm 4.501862416063e-09
Iteration 1 residual: 4.501862416062586e-09
F_reac = -0.001013713919228755
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 101.0 is 0.0019170471443344275
At growth time 101.00, growth rate is 1.000029082454435
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.180286908906e-04
Iteration 0 residual: 0.00021802869089062284
Residual norms for tmp_ solve.
0 KSP Residual norm 2.180286908906e-04
1 KSP Residual norm 2.740461198514e-18
1 SNES Function norm 4.565611812819e-09
Iteration 1 residual: 4.565611812819303e-09
F_reac = -0.001029255216213752
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 102.0 is 0.0019171028149582929
At growth time 102.00, growth rate is 1.0000293943250236
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.203663320087e-04
Iteration 0 residual: 0.00022036633200874168
Residual norms for tmp_ solve.
0 KSP Residual norm 2.203663320087e-04
1 KSP Residual norm 2.608715238552e-18
1 SNES Function norm 4.664055060798e-09
Iteration 1 residual: 4.6640550607976565e-09
F_reac = -0.0010449634183055422
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 103.0 is 0.0019171590842143042
At growth time 103.00, growth rate is 1.0000298199427948
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.235566568354e-04
Iteration 0 residual: 0.0002235566568354288
Residual norms for tmp_ solve.
0 KSP Residual norm 2.235566568354e-04
1 KSP Residual norm 2.651101557533e-18
1 SNES Function norm 4.800097249704e-09
Iteration 1 residual: 4.8000972497043826e-09
F_reac = -0.0010608993182295598
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 104.0 is 0.0019172161699066907
At growth time 104.00, growth rate is 1.0000303607013767
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.276101018696e-04
Iteration 0 residual: 0.00022761010186959286
Residual norms for tmp_ solve.
0 KSP Residual norm 2.276101018696e-04
1 KSP Residual norm 2.973433832620e-18
1 SNES Function norm 4.975762593879e-09
Iteration 1 residual: 4.975762593879465e-09
F_reac = -0.0010771244594931831
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.18 seconds.
CSA at time 105.0 is 0.0019172742925340595
At growth time 105.00, growth rate is 1.0000310129364247
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.324991853707e-04
Iteration 0 residual: 0.00023249918537071116
Residual norms for tmp_ solve.
0 KSP Residual norm 2.324991853707e-04
1 KSP Residual norm 2.787976748052e-18
1 SNES Function norm 5.191841140668e-09
Iteration 1 residual: 5.19184114066796e-09
F_reac = -0.0010936984338966319
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 106.0 is 0.0019173336656075294
At growth time 106.00, growth rate is 1.0000317666257177
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.381487634693e-04
Iteration 0 residual: 0.0002381487634693004
Residual norms for tmp_ solve.
0 KSP Residual norm 2.381487634693e-04
1 KSP Residual norm 2.933670846108e-18
1 SNES Function norm 5.447248990318e-09
Iteration 1 residual: 5.447248990317605e-09
F_reac = -0.001110675484568782
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 107.0 is 0.0019173944834784185
At growth time 107.00, growth rate is 1.0000326036189842
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.444227615990e-04
Iteration 0 residual: 0.00024442276159895333
Residual norms for tmp_ solve.
0 KSP Residual norm 2.444227615990e-04
1 KSP Residual norm 2.888405136831e-18
1 SNES Function norm 5.738072190565e-09
Iteration 1 residual: 5.7380721905651545e-09
F_reac = -0.001128100162950184
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.18 seconds.
CSA at time 108.0 is 0.0019174569057748224
Output written for time 108.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 108.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 108.00, growth rate is 1.0000334953983139
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.511073877924e-04
Iteration 0 residual: 0.00025110738779239534
Residual norms for tmp_ solve.
0 KSP Residual norm 2.511073877924e-04
1 KSP Residual norm 3.124371770161e-18
1 SNES Function norm 6.056252186112e-09
Iteration 1 residual: 6.056252186111822e-09
F_reac = -0.001146001788754186
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 109.0 is 0.001917521037546849
At growth time 109.00, growth rate is 1.000034622492413
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.595559843049e-04
Iteration 0 residual: 0.000259555984304897
Residual norms for tmp_ solve.
0 KSP Residual norm 2.595559843049e-04
1 KSP Residual norm 3.222578820882e-18
1 SNES Function norm 6.470677106245e-09
Iteration 1 residual: 6.4706771062449474e-09
F_reac = -0.0011645060673208677
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 110.0 is 0.001917587329531458
At growth time 110.00, growth rate is 1.0000368797067118
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.764763503559e-04
Iteration 0 residual: 0.0002764763503559374
Residual norms for tmp_ solve.
0 KSP Residual norm 2.764763503559e-04
1 KSP Residual norm 3.376081962151e-18
1 SNES Function norm 7.341893293005e-09
Iteration 1 residual: 7.341893293005351e-09
F_reac = -0.0011842165756080693
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 111.0 is 0.0019176579459169339
At growth time 111.00, growth rate is 1.000038892455011
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.915634447382e-04
Iteration 0 residual: 0.00029156344473816985
Residual norms for tmp_ solve.
0 KSP Residual norm 2.915634447382e-04
1 KSP Residual norm 3.473852275147e-18
1 SNES Function norm 8.165091744680e-09
Iteration 1 residual: 8.165091744679544e-09
F_reac = -0.0012050034165566902
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 112.0 is 0.0019177324189973723
At growth time 112.00, growth rate is 1.0000403225158525
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.022823743806e-04
Iteration 0 residual: 0.00030228237438056454
Residual norms for tmp_ solve.
0 KSP Residual norm 3.022823743806e-04
1 KSP Residual norm 3.582499189688e-18
1 SNES Function norm 8.776548589693e-09
Iteration 1 residual: 8.776548589692853e-09
F_reac = -0.0012265554475324777
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 113.0 is 0.0019178096333961254
At growth time 113.00, growth rate is 1.0000412272145598
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.090631164839e-04
Iteration 0 residual: 0.00030906311648392905
Residual norms for tmp_ solve.
0 KSP Residual norm 3.090631164839e-04
1 KSP Residual norm 4.305226198440e-18
1 SNES Function norm 9.174759353224e-09
Iteration 1 residual: 9.174759353223986e-09
F_reac = -0.0012485919084767238
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 114.0 is 0.001917888583374094
At growth time 114.00, growth rate is 1.00004179920217
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.133499061678e-04
Iteration 0 residual: 0.0003133499061677733
Residual norms for tmp_ solve.
0 KSP Residual norm 3.133499061678e-04
1 KSP Residual norm 3.751091693775e-18
1 SNES Function norm 9.431088351265e-09
Iteration 1 residual: 9.43108835126506e-09
F_reac = -0.0012709348959047552
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 115.0 is 0.0019179686319858679
At growth time 115.00, growth rate is 1.0000421624923117
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.160723470078e-04
Iteration 0 residual: 0.0003160723470077619
Residual norms for tmp_ solve.
0 KSP Residual norm 3.160723470078e-04
1 KSP Residual norm 3.767221034276e-18
1 SNES Function norm 9.595719525315e-09
Iteration 1 residual: 9.595719525314703e-09
F_reac = -0.0012934728041525088
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 116.0 is 0.001918049379686272
At growth time 116.00, growth rate is 1.0000423898186053
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.177756376475e-04
Iteration 0 residual: 0.0003177756376475435
Residual norms for tmp_ solve.
0 KSP Residual norm 3.177756376475e-04
1 KSP Residual norm 3.978013896554e-18
1 SNES Function norm 9.699462672214e-09
Iteration 1 residual: 9.699462672213976e-09
F_reac = -0.0013161329265504703
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 117.0 is 0.0019181305661640595
At growth time 117.00, growth rate is 1.0000425257440586
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.187938133979e-04
Iteration 0 residual: 0.0003187938133978968
Residual norms for tmp_ solve.
0 KSP Residual norm 3.187938133979e-04
1 KSP Residual norm 3.845412874719e-18
1 SNES Function norm 9.761756386192e-09
Iteration 1 residual: 9.761756386192485e-09
F_reac = -0.0013388663842457066
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 118.0 is 0.0019182120164153882
Output written for time 118.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 118.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 118.00, growth rate is 1.0000425984902408
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.193384169260e-04
Iteration 0 residual: 0.0003193384169260318
Residual norms for tmp_ solve.
0 KSP Residual norm 3.193384169260e-04
1 KSP Residual norm 3.876727065744e-18
1 SNES Function norm 9.795177333662e-09
Iteration 1 residual: 9.795177333661982e-09
F_reac = -0.0013616393915197773
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 119.0 is 0.0019182936094616287
At growth time 119.00, growth rate is 1.000042626412998
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.195470394029e-04
Iteration 0 residual: 0.00031954703940294287
Residual norms for tmp_ solve.
0 KSP Residual norm 3.195470394029e-04
1 KSP Residual norm 3.773743570220e-18
1 SNES Function norm 9.808016553655e-09
Iteration 1 residual: 9.808016553655303e-09
F_reac = -0.001384427976579022
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 120.0 is 0.0019183752594633622
At growth time 120.00, growth rate is 1.0000426217312441
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.195112709387e-04
Iteration 0 residual: 0.00031951127093868254
Residual norms for tmp_ solve.
0 KSP Residual norm 3.195112709387e-04
1 KSP Residual norm 3.838725054773e-18
1 SNES Function norm 9.805858583975e-09
Iteration 1 residual: 9.80585858397523e-09
F_reac = -0.0014072147023938921
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 121.0 is 0.0019184569039723096
At growth time 121.00, growth rate is 1.0000425927557408
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.192934070381e-04
Iteration 0 residual: 0.0003192934070381117
Residual norms for tmp_ solve.
0 KSP Residual norm 3.192934070381e-04
1 KSP Residual norm 3.806898758624e-18
1 SNES Function norm 9.792526527473e-09
Iteration 1 residual: 9.79252652747317e-09
F_reac = -0.0014299865748005054
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 122.0 is 0.001918538496449807
At growth time 122.00, growth rate is 1.000042545258948
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.189367167357e-04
Iteration 0 residual: 0.0003189367167357307
Residual norms for tmp_ solve.
0 KSP Residual norm 3.189367167357e-04
1 KSP Residual norm 3.752856710534e-18
1 SNES Function norm 9.770695898207e-09
Iteration 1 residual: 9.770695898206533e-09
F_reac = -0.0014527336867463155
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 123.0 is 0.0019186200014075527
At growth time 123.00, growth rate is 1.0000424833352708
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.184718907834e-04
Iteration 0 residual: 0.000318471890783438
Residual norms for tmp_ solve.
0 KSP Residual norm 3.184718907834e-04
1 KSP Residual norm 3.852391468164e-18
1 SNES Function norm 9.742271563211e-09
Iteration 1 residual: 9.742271563211023e-09
F_reac = -0.0014754483197563588
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 124.0 is 0.0019187013911952158
At growth time 124.00, growth rate is 1.000042409950816
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.179211624922e-04
Iteration 0 residual: 0.000317921162492166
Residual norms for tmp_ solve.
0 KSP Residual norm 3.179211624922e-04
1 KSP Residual norm 3.898748308021e-18
1 SNES Function norm 9.708641520508e-09
Iteration 1 residual: 9.708641520508454e-09
F_reac = -0.0014981243415718543
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 125.0 is 0.0019187826438404499
At growth time 125.00, growth rate is 1.0000423273001096
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.173009815946e-04
Iteration 0 residual: 0.00031730098159460905
Residual norms for tmp_ solve.
0 KSP Residual norm 3.173009815946e-04
1 KSP Residual norm 3.790825141594e-18
1 SNES Function norm 9.670834564424e-09
Iteration 1 residual: 9.67083456442393e-09
F_reac = -0.0015207567928456351
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 126.0 is 0.0019188637415718023
At growth time 126.00, growth rate is 1.0000422370408388
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.166237737977e-04
Iteration 0 residual: 0.00031662377379766633
Residual norms for tmp_ solve.
0 KSP Residual norm 3.166237737977e-04
1 KSP Residual norm 3.959166057041e-18
1 SNES Function norm 9.629632447321e-09
Iteration 1 residual: 9.62963244732058e-09
F_reac = -0.001543341600661298
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 127.0 is 0.001918944669791035
At growth time 127.00, growth rate is 1.0000421404504747
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.158991148060e-04
Iteration 0 residual: 0.0003158991148059764
Residual norms for tmp_ solve.
0 KSP Residual norm 3.158991148060e-04
1 KSP Residual norm 3.842337761202e-18
1 SNES Function norm 9.585637634377e-09
Iteration 1 residual: 9.585637634377303e-09
F_reac = -0.0015658753748270383
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 128.0 is 0.0019190254163452658
Output written for time 128.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 128.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 128.00, growth rate is 1.0000420385322446
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.151345246437e-04
Iteration 0 residual: 0.00031513452464371406
Residual norms for tmp_ solve.
0 KSP Residual norm 3.151345246437e-04
1 KSP Residual norm 4.125669953503e-18
1 SNES Function norm 9.539325800916e-09
Iteration 1 residual: 9.539325800915896e-09
F_reac = -0.0015883552615704344
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 129.0 is 0.0019191059710019789
At growth time 129.00, growth rate is 1.0000419320878853
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.143360130014e-04
Iteration 0 residual: 0.0003143360130014153
Residual norms for tmp_ solve.
0 KSP Residual norm 3.143360130014e-04
1 KSP Residual norm 3.824182263329e-18
1 SNES Function norm 9.491077003005e-09
Iteration 1 residual: 9.491077003004924e-09
F_reac = -0.0016107788355836097
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 130.0 is 0.0019191863250633667
At growth time 130.00, growth rate is 1.0000418217683515
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.135084593377e-04
Iteration 0 residual: 0.0003135084593376836
Residual norms for tmp_ solve.
0 KSP Residual norm 3.135084593377e-04
1 KSP Residual norm 3.748990523351e-18
1 SNES Function norm 9.441201184298e-09
Iteration 1 residual: 9.441201184297776e-09
F_reac = -0.0016331440195850317
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 131.0 is 0.0019192664710776751
At growth time 131.00, growth rate is 1.0000417081097226
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.126558820178e-04
Iteration 0 residual: 0.0003126558820177597
Residual norms for tmp_ solve.
0 KSP Residual norm 3.126558820178e-04
1 KSP Residual norm 3.844740975941e-18
1 SNES Function norm 9.389952761146e-09
Iteration 1 residual: 9.389952761146207e-09
F_reac = -0.001655449022793444
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 132.0 is 0.0019193464026193432
At growth time 132.00, growth rate is 1.0000415915590406
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.117816319988e-04
Iteration 0 residual: 0.00031178163199881956
Residual norms for tmp_ solve.
0 KSP Residual norm 3.117816319988e-04
1 KSP Residual norm 3.640723468982e-18
1 SNES Function norm 9.337545870026e-09
Iteration 1 residual: 9.337545870026493e-09
F_reac = -0.001677692293418547
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 133.0 is 0.0019194261141185739
At growth time 133.00, growth rate is 1.000041472493216
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.108885345422e-04
Iteration 0 residual: 0.00031088853454219615
Residual norms for tmp_ solve.
0 KSP Residual norm 3.108885345422e-04
1 KSP Residual norm 3.872928919678e-18
1 SNES Function norm 9.284159334289e-09
Iteration 1 residual: 9.284159334288506e-09
F_reac = -0.0016998724811150743
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 134.0 is 0.0019195056007271078
At growth time 134.00, growth rate is 1.0000413512330861
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.099789945881e-04
Iteration 0 residual: 0.0003099789945880701
Residual norms for tmp_ solve.
0 KSP Residual norm 3.099789945881e-04
1 KSP Residual norm 3.842294631740e-18
1 SNES Function norm 9.229946165032e-09
Iteration 1 residual: 9.229946165032189e-09
F_reac = -0.0017219884070533967
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 135.0 is 0.0019195848582108993
At growth time 135.00, growth rate is 1.000041228054041
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.090550764061e-04
Iteration 0 residual: 0.0003090550764061413
Residual norms for tmp_ solve.
0 KSP Residual norm 3.090550764061e-04
1 KSP Residual norm 3.702922589331e-18
1 SNES Function norm 9.175037833852e-09
Iteration 1 residual: 9.175037833852464e-09
F_reac = -0.00174403903959766
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 136.0 is 0.0019196638828631548
At growth time 136.00, growth rate is 1.0000411031941787
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.081185647368e-04
Iteration 0 residual: 0.0003081185647367851
Residual norms for tmp_ solve.
0 KSP Residual norm 3.081185647368e-04
1 KSP Residual norm 3.887470326760e-18
1 SNES Function norm 9.119547552278e-09
Iteration 1 residual: 9.119547552277588e-09
F_reac = -0.0017660234744063651
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 137.0 is 0.001919742671432944
At growth time 137.00, growth rate is 1.0000409768606608
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.071710124096e-04
Iteration 0 residual: 0.00030717101240958526
Residual norms for tmp_ solve.
0 KSP Residual norm 3.071710124096e-04
1 KSP Residual norm 3.605910385634e-18
1 SNES Function norm 9.063573696844e-09
Iteration 1 residual: 9.06357369684371e-09
F_reac = -0.0017879409178663918
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 138.0 is 0.0019198212210660187
Output written for time 138.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 138.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 138.00, growth rate is 1.0000408492347284
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.062137779673e-04
Iteration 0 residual: 0.0003062137779672629
Residual norms for tmp_ solve.
0 KSP Residual norm 3.062137779673e-04
1 KSP Residual norm 3.549286245695e-18
1 SNES Function norm 9.007202123665e-09
Iteration 1 residual: 9.007202123665267e-09
F_reac = -0.0018097906732707646
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 139.0 is 0.0019198995292551775
At growth time 139.00, growth rate is 1.0000407204757171
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.052480557450e-04
Iteration 0 residual: 0.0003052480557450097
Residual norms for tmp_ solve.
0 KSP Residual norm 3.052480557450e-04
1 KSP Residual norm 3.690182693784e-18
1 SNES Function norm 8.950508429968e-09
Iteration 1 residual: 8.9505084299679e-09
F_reac = -0.0018315721290887103
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 140.0 is 0.0019199775937983673
At growth time 140.00, growth rate is 1.000040590724306
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.042749002272e-04
Iteration 0 residual: 0.0003042749002271599
Residual norms for tmp_ solve.
0 KSP Residual norm 3.042749002272e-04
1 KSP Residual norm 3.693672563542e-18
1 SNES Function norm 8.893558946991e-09
Iteration 1 residual: 8.893558946990503e-09
F_reac = -0.0018532847490134723
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 141.0 is 0.0019200554127629787
At growth time 141.00, growth rate is 1.0000404601051747
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.032952459747e-04
Iteration 0 residual: 0.00030329524597467
Residual norms for tmp_ solve.
0 KSP Residual norm 3.032952459747e-04
1 KSP Residual norm 3.849072861184e-18
1 SNES Function norm 8.836411961188e-09
Iteration 1 residual: 8.83641196118754e-09
F_reac = -0.0018749280633934859
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 142.0 is 0.0019201329844552209
At growth time 142.00, growth rate is 1.0000403287291986
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.023099240687e-04
Iteration 0 residual: 0.0003023099240686868
Residual norms for tmp_ solve.
0 KSP Residual norm 3.023099240687e-04
1 KSP Residual norm 3.617643772672e-18
1 SNES Function norm 8.779120129310e-09
Iteration 1 residual: 8.779120129310204e-09
F_reac = -0.0018965016618785165
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 143.0 is 0.0019202103073937286
At growth time 143.00, growth rate is 1.0000401966952772
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.013196758107e-04
Iteration 0 residual: 0.0003013196758106554
Residual norms for tmp_ solve.
0 KSP Residual norm 3.013196758107e-04
1 KSP Residual norm 3.648307882163e-18
1 SNES Function norm 8.721728545352e-09
Iteration 1 residual: 8.72172854535196e-09
F_reac = -0.0019180051869983276
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 144.0 is 0.0019202873802866022
Output written for time 144.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 144.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9203e-03. Feedback scalar: 0.993
======================================================================
Processing event from t=144 to 145
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=145 to 192
At growth time 145.00, growth rate is 1.0000397952497373
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.983099508446e-04
Iteration 0 residual: 0.0002983099508446206
Residual norms for tmp_ solve.
0 KSP Residual norm 2.983099508446e-04
1 KSP Residual norm 3.795454328017e-18
1 SNES Function norm 8.548383303600e-09
Iteration 1 residual: 8.548383303600346e-09
F_reac = -0.0019392946653322247
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 146.0 is 0.0019203636865007942
Output written for time 146.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 146.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 146.00, growth rate is 1.0000397077652026
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.976537726031e-04
Iteration 0 residual: 0.00029765377260308973
Residual norms for tmp_ solve.
0 KSP Residual norm 2.976537726031e-04
1 KSP Residual norm 3.809814079529e-18
1 SNES Function norm 8.510854576417e-09
Iteration 1 residual: 8.510854576417032e-09
F_reac = -0.0019605377010255983
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.16 seconds.
CSA at time 147.0 is 0.0019204398280091323
At growth time 147.00, growth rate is 1.0000396854948195
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.974863007212e-04
Iteration 0 residual: 0.00029748630072119064
Residual norms for tmp_ solve.
0 KSP Residual norm 2.974863007212e-04
1 KSP Residual norm 3.581225863705e-18
1 SNES Function norm 8.501302885502e-09
Iteration 1 residual: 8.501302885502163e-09
F_reac = -0.0019817693228368666
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 148.0 is 0.0019205159298351594
At growth time 148.00, growth rate is 1.0000397477408487
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.979523253106e-04
Iteration 0 residual: 0.0002979523253105521
Residual norms for tmp_ solve.
0 KSP Residual norm 2.979523253106e-04
1 KSP Residual norm 3.758352993280e-18
1 SNES Function norm 8.527995884365e-09
Iteration 1 residual: 8.527995884365414e-09
F_reac = -0.0020030347394408253
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 149.0 is 0.0019205921540519466
At growth time 149.00, growth rate is 1.0000399083219993
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 2.991554158345e-04
Iteration 0 residual: 0.0002991554158345454
Residual norms for tmp_ solve.
0 KSP Residual norm 2.991554158345e-04
1 KSP Residual norm 3.626771813360e-18
1 SNES Function norm 8.597035921403e-09
Iteration 1 residual: 8.597035921402859e-09
F_reac = -0.002024386553561643
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 150.0 is 0.0019206686892592184
At growth time 150.00, growth rate is 1.0000401767794047
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.011670781218e-04
Iteration 0 residual: 0.00030116707812176147
Residual norms for tmp_ solve.
0 KSP Residual norm 3.011670781218e-04
1 KSP Residual norm 3.556710618453e-18
1 SNES Function norm 8.713085804349e-09
Iteration 1 residual: 8.713085804348862e-09
F_reac = -0.0020458824848151634
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 151.0 is 0.0019207457423851095
At growth time 151.00, growth rate is 1.0000405587193195
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.040293226951e-04
Iteration 0 residual: 0.00030402932269512717
Residual norms for tmp_ solve.
0 KSP Residual norm 3.040293226951e-04
1 KSP Residual norm 3.612274885136e-18
1 SNES Function norm 8.879527461817e-09
Iteration 1 residual: 8.879527461816553e-09
F_reac = -0.0020675832569051083
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 152.0 is 0.0019208235311433588
At growth time 152.00, growth rate is 1.00004105552177
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.077524809389e-04
Iteration 0 residual: 0.0003077524809388826
Residual norms for tmp_ solve.
0 KSP Residual norm 3.077524809389e-04
1 KSP Residual norm 3.736035181878e-18
1 SNES Function norm 9.098383585088e-09
Iteration 1 residual: 9.098383585087707e-09
F_reac = -0.0020895503424485313
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 153.0 is 0.0019209022759302074
At growth time 153.00, growth rate is 1.0000416635249705
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.123090922855e-04
Iteration 0 residual: 0.000312309092285487
Residual norms for tmp_ solve.
0 KSP Residual norm 3.123090922855e-04
1 KSP Residual norm 4.016651374533e-18
1 SNES Function norm 9.369849255338e-09
Iteration 1 residual: 9.369849255338345e-09
F_reac = -0.0021118432622311
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 154.0 is 0.0019209821901550847
At growth time 154.00, growth rate is 1.000042372730225
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.176241977236e-04
Iteration 0 residual: 0.00031762419772355516
Residual norms for tmp_ solve.
0 KSP Residual norm 3.176241977236e-04
1 KSP Residual norm 3.909092005190e-18
1 SNES Function norm 9.691543548887e-09
Iteration 1 residual: 9.691543548887183e-09
F_reac = -0.002134516198136596
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 1.17 seconds.
CSA at time 155.0 is 0.0019210634680849866
At growth time 155.00, growth rate is 1.0000431650382615
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.235621218850e-04
Iteration 0 residual: 0.00032356212188498784
Residual norms for tmp_ solve.
0 KSP Residual norm 3.235621218850e-04
1 KSP Residual norm 3.930268711512e-18
1 SNES Function norm 1.005735198645e-08
Iteration 1 residual: 1.0057351986447867e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.005735198645e-08
1 KSP Residual norm 1.500949093561e-20
2 SNES Function norm 5.118680235454e-14
Iteration 2 residual: 5.11868023545445e-14
F_reac = -0.0021576274453990875
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 156.0 is 0.0019211462681106824
Output written for time 156.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 156.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 156.00, growth rate is 1.000044004144852
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.298606938269e-04
Iteration 0 residual: 0.0003298606938268821
Residual norms for tmp_ solve.
0 KSP Residual norm 3.298606938269e-04
1 KSP Residual norm 3.972628137088e-18
1 SNES Function norm 1.045348390688e-08
Iteration 1 residual: 1.0453483906878303e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.045348390688e-08
1 KSP Residual norm 3.005272952126e-20
2 SNES Function norm 1.737492404700e-13
Iteration 2 residual: 1.7374924046999285e-13
F_reac = -0.0021811750679567583
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 157.0 is 0.00192123068253825
At growth time 157.00, growth rate is 1.0000450708857436
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.378558736312e-04
Iteration 0 residual: 0.000337855873631174
Residual norms for tmp_ solve.
0 KSP Residual norm 3.378558736312e-04
1 KSP Residual norm 4.395160381472e-18
1 SNES Function norm 1.096649388740e-08
Iteration 1 residual: 1.096649388740221e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.096649388740e-08
1 KSP Residual norm 2.874305994348e-20
2 SNES Function norm 1.991733183419e-13
Iteration 2 residual: 1.9917331834193194e-13
F_reac = -0.002205294205090027
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 158.0 is 0.0019213171471267477
At growth time 158.00, growth rate is 1.000047300589989
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.545680327583e-04
Iteration 0 residual: 0.0003545680327583388
Residual norms for tmp_ solve.
0 KSP Residual norm 3.545680327583e-04
1 KSP Residual norm 4.294966634916e-18
1 SNES Function norm 1.207849903341e-08
Iteration 1 residual: 1.2078499033412294e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.207849903341e-08
1 KSP Residual norm 3.411070843491e-20
2 SNES Function norm 2.636029320124e-13
Iteration 2 residual: 2.636029320123576e-13
F_reac = -0.0022306072643895167
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 159.0 is 0.0019214078932953788
At growth time 159.00, growth rate is 1.0000492921979816
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.694953245069e-04
Iteration 0 residual: 0.00036949532450690915
Residual norms for tmp_ solve.
0 KSP Residual norm 3.694953245069e-04
1 KSP Residual norm 4.485043994175e-18
1 SNES Function norm 1.311718432292e-08
Iteration 1 residual: 1.311718432292315e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.311718432292e-08
1 KSP Residual norm 3.787580740519e-20
2 SNES Function norm 3.369006157159e-13
Iteration 2 residual: 3.369006157158994e-13
F_reac = -0.002256986931309711
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 160.0 is 0.0019215024648320457
At growth time 160.00, growth rate is 1.000050695473392
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.800126201474e-04
Iteration 0 residual: 0.00038001262014743275
Residual norms for tmp_ solve.
0 KSP Residual norm 3.800126201474e-04
1 KSP Residual norm 4.654980764894e-18
1 SNES Function norm 1.387477944861e-08
Iteration 1 residual: 1.3874779448613068e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.387477944861e-08
1 KSP Residual norm 4.170085567892e-20
2 SNES Function norm 4.001567808889e-13
Iteration 2 residual: 4.0015678088885745e-13
F_reac = -0.0022841184403377497
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.20 seconds.
CSA at time 161.0 is 0.0019215997334691027
At growth time 161.00, growth rate is 1.000051567757199
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.865498067691e-04
Iteration 0 residual: 0.0003865498067691362
Residual norms for tmp_ solve.
0 KSP Residual norm 3.865498067691e-04
1 KSP Residual norm 4.948575448532e-18
1 SNES Function norm 1.435643142665e-08
Iteration 1 residual: 1.4356431426649379e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.435643142665e-08
1 KSP Residual norm 4.394814461752e-20
2 SNES Function norm 4.450178205946e-13
Iteration 2 residual: 4.450178205946383e-13
F_reac = -0.002311717677804192
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 162.0 is 0.0019216986807550046
At growth time 162.00, growth rate is 1.0000521034664955
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.905641803299e-04
Iteration 0 residual: 0.0003905641803299406
Residual norms for tmp_ solve.
0 KSP Residual norm 3.905641803299e-04
1 KSP Residual norm 4.679527487791e-18
1 SNES Function norm 1.465631113300e-08
Iteration 1 residual: 1.465631113299812e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.465631113300e-08
1 KSP Residual norm 4.580687899938e-20
2 SNES Function norm 4.747569461459e-13
Iteration 2 residual: 4.747569461458837e-13
F_reac = -0.0023396045495446436
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 163.0 is 0.00192179866110088
At growth time 163.00, growth rate is 1.0000524284729955
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.929992288407e-04
Iteration 0 residual: 0.000392999228840667
Residual norms for tmp_ solve.
0 KSP Residual norm 3.929992288407e-04
1 KSP Residual norm 4.953438173542e-18
1 SNES Function norm 1.483975389652e-08
Iteration 1 residual: 1.4839753896524703e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.483975389652e-08
1 KSP Residual norm 4.589969520064e-20
2 SNES Function norm 4.941026442844e-13
Iteration 2 residual: 4.941026442843681e-13
F_reac = -0.002367666308889865
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 164.0 is 0.0019218992703323773
At growth time 164.00, growth rate is 1.0000526164388683
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.944070938895e-04
Iteration 0 residual: 0.00039440709388954717
Residual norms for tmp_ solve.
0 KSP Residual norm 3.944070938895e-04
1 KSP Residual norm 4.677341185903e-18
1 SNES Function norm 1.494636591479e-08
Iteration 1 residual: 1.494636591478509e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.494636591479e-08
1 KSP Residual norm 4.906556678915e-20
2 SNES Function norm 5.053150332488e-13
Iteration 2 residual: 5.053150332488186e-13
F_reac = -0.002395829622114251
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 165.0 is 0.0019220002455554838
At growth time 165.00, growth rate is 1.0000527124254739
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.951255357655e-04
Iteration 0 residual: 0.0003951255357655024
Residual norms for tmp_ solve.
0 KSP Residual norm 3.951255357655e-04
1 KSP Residual norm 4.765647546465e-18
1 SNES Function norm 1.500095318982e-08
Iteration 1 residual: 1.50009531898195e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.500095318982e-08
1 KSP Residual norm 4.775995920914e-20
2 SNES Function norm 5.113253185920e-13
Iteration 2 residual: 5.113253185919647e-13
F_reac = -0.002424045265691241
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 166.0 is 0.00192210141030234
Output written for time 166.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 166.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 166.00, growth rate is 1.0000527449357681
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.953681995582e-04
Iteration 0 residual: 0.0003953681995582435
Residual norms for tmp_ solve.
0 KSP Residual norm 3.953681995582e-04
1 KSP Residual norm 4.822428946070e-18
1 SNES Function norm 1.501946071500e-08
Iteration 1 residual: 1.5019460715001493e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.501946071500e-08
1 KSP Residual norm 4.653385209901e-20
2 SNES Function norm 5.138905068055e-13
Iteration 2 residual: 5.138905068055489e-13
F_reac = -0.0024522792667603316
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 167.0 is 0.0019222026427733005
At growth time 167.00, growth rate is 1.0000527324903064
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.952739065813e-04
Iteration 0 residual: 0.00039527390658128375
Residual norms for tmp_ solve.
0 KSP Residual norm 3.952739065813e-04
1 KSP Residual norm 4.861026795301e-18
1 SNES Function norm 1.501236696238e-08
Iteration 1 residual: 1.5012366962380544e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.501236696238e-08
1 KSP Residual norm 4.669324075337e-20
2 SNES Function norm 5.130801484333e-13
Iteration 2 residual: 5.130801484333399e-13
F_reac = -0.0024805075620537935
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 168.0 is 0.0019223038566911332
At growth time 168.00, growth rate is 1.0000526874069464
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.949349855156e-04
Iteration 0 residual: 0.0003949349855155826
Residual norms for tmp_ solve.
0 KSP Residual norm 3.949349855156e-04
1 KSP Residual norm 4.693312263745e-18
1 SNES Function norm 1.498669814023e-08
Iteration 1 residual: 1.4986698140225358e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.498669814023e-08
1 KSP Residual norm 4.670778609672e-20
2 SNES Function norm 5.105880800462e-13
Iteration 2 residual: 5.105880800462467e-13
F_reac = -0.0025087126790788385
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 169.0 is 0.0019224049894043858
At growth time 169.00, growth rate is 1.0000526180570364
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.944141838624e-04
Iteration 0 residual: 0.0003944141838623632
Residual norms for tmp_ solve.
0 KSP Residual norm 3.944141838624e-04
1 KSP Residual norm 4.857445653977e-18
1 SNES Function norm 1.494725852186e-08
Iteration 1 residual: 1.4947258521857916e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.494725852186e-08
1 KSP Residual norm 4.989130495686e-20
2 SNES Function norm 5.066255508778e-13
Iteration 2 residual: 5.066255508777661e-13
F_reac = -0.002536881624537447
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.24 seconds.
CSA at time 170.0 is 0.0019225059943179183
At growth time 170.00, growth rate is 1.0000525302506849
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.937550513119e-04
Iteration 0 residual: 0.0003937550513119187
Residual norms for tmp_ solve.
0 KSP Residual norm 3.937550513119e-04
1 KSP Residual norm 5.038768017092e-18
1 SNES Function norm 1.489739898192e-08
Iteration 1 residual: 1.4897398981915657e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.489739898192e-08
1 KSP Residual norm 4.718857126126e-20
2 SNES Function norm 5.015323254597e-13
Iteration 2 residual: 5.015323254596875e-13
F_reac = -0.0025650045138691517
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 171.0 is 0.001922606835980418
At growth time 171.00, growth rate is 1.0000524281059653
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.929884548920e-04
Iteration 0 residual: 0.0003929884548919624
Residual norms for tmp_ solve.
0 KSP Residual norm 3.929884548920e-04
1 KSP Residual norm 4.812741699439e-18
1 SNES Function norm 1.483950339907e-08
Iteration 1 residual: 1.4839503399072823e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.483950339907e-08
1 KSP Residual norm 4.641690793207e-20
2 SNES Function norm 4.956492636592e-13
Iteration 2 residual: 4.95649263659248e-13
F_reac = -0.0025930736659196736
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 172.0 is 0.0019227074868389791
At growth time 172.00, growth rate is 1.000052314604008
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.921367396630e-04
Iteration 0 residual: 0.0003921367396630146
Residual norms for tmp_ solve.
0 KSP Residual norm 3.921367396630e-04
1 KSP Residual norm 5.004253445274e-18
1 SNES Function norm 1.477530353011e-08
Iteration 1 residual: 1.4775303530108505e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.477530353011e-08
1 KSP Residual norm 4.623636693453e-20
2 SNES Function norm 4.890468650314e-13
Iteration 2 residual: 4.890468650314277e-13
F_reac = -0.0026210829945940897
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 173.0 is 0.0019228079250584213
At growth time 173.00, growth rate is 1.0000521919489498
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.912164267395e-04
Iteration 0 residual: 0.00039121642673950593
Residual norms for tmp_ solve.
0 KSP Residual norm 3.912164267395e-04
1 KSP Residual norm 5.346538631236e-18
1 SNES Function norm 1.470608330065e-08
Iteration 1 residual: 1.4706083300652676e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.470608330065e-08
1 KSP Residual norm 4.657110415549e-20
2 SNES Function norm 4.820889080315e-13
Iteration 2 residual: 4.820889080315375e-13
F_reac = -0.0026490275931163056
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 174.0 is 0.0019229081330309724
At growth time 174.00, growth rate is 1.0000520618046658
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.902399876962e-04
Iteration 0 residual: 0.0003902399876961757
Residual norms for tmp_ solve.
0 KSP Residual norm 3.902399876962e-04
1 KSP Residual norm 4.701902477770e-18
1 SNES Function norm 1.463281492041e-08
Iteration 1 residual: 1.4632814920412917e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.463281492041e-08
1 KSP Residual norm 4.724161280074e-20
2 SNES Function norm 4.747609207544e-13
Iteration 2 residual: 4.747609207543855e-13
F_reac = -0.0026769034449645834
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 175.0 is 0.0019230080963400537
At growth time 175.00, growth rate is 1.0000519254526268
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.892170278024e-04
Iteration 0 residual: 0.0003892170278024397
Residual norms for tmp_ solve.
0 KSP Residual norm 3.892170278024e-04
1 KSP Residual norm 4.753498795464e-18
1 SNES Function norm 1.455624841261e-08
Iteration 1 residual: 1.4556248412614292e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.455624841261e-08
1 KSP Residual norm 4.937296682221e-20
2 SNES Function norm 4.672196889979e-13
Iteration 2 residual: 4.6721968899787e-13
F_reac = -0.002704707219256737
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 176.0 is 0.0019231078030268556
Output written for time 176.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 176.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 176.00, growth rate is 1.0000517838986496
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.881550861509e-04
Iteration 0 residual: 0.0003881550861508923
Residual norms for tmp_ solve.
0 KSP Residual norm 3.881550861509e-04
1 KSP Residual norm 5.175679137373e-18
1 SNES Function norm 1.447697403122e-08
Iteration 1 residual: 1.447697403121965e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.447697403122e-08
1 KSP Residual norm 5.007031574110e-20
2 SNES Function norm 4.593570814850e-13
Iteration 2 residual: 4.593570814849879e-13
F_reac = -0.0027324361232620585
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 177.0 is 0.0019232072430616426
At growth time 177.00, growth rate is 1.0000516379461424
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.870601846867e-04
Iteration 0 residual: 0.00038706018468671465
Residual norms for tmp_ solve.
0 KSP Residual norm 3.870601846867e-04
1 KSP Residual norm 4.842445624992e-18
1 SNES Function norm 1.439546302533e-08
Iteration 1 residual: 1.4395463025333124e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.439546302533e-08
1 KSP Residual norm 4.668641224580e-20
2 SNES Function norm 4.517294637099e-13
Iteration 2 residual: 4.51729463709851e-13
F_reac = -0.0027600877941222593
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 178.0 is 0.001923306407955578
At growth time 178.00, growth rate is 1.0000514882471272
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.859372106253e-04
Iteration 0 residual: 0.0003859372106252992
Residual norms for tmp_ solve.
0 KSP Residual norm 3.859372106253e-04
1 KSP Residual norm 4.790786529226e-18
1 SNES Function norm 1.431209932663e-08
Iteration 1 residual: 1.4312099326629567e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.431209932663e-08
1 KSP Residual norm 4.236098189137e-20
2 SNES Function norm 4.436020686925e-13
Iteration 2 residual: 4.4360206869248977e-13
F_reac = -0.0027876602178381307
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 179.0 is 0.001923405290470384
At growth time 179.00, growth rate is 1.0000513353383498
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.847901871287e-04
Iteration 0 residual: 0.00038479018712867744
Residual norms for tmp_ solve.
0 KSP Residual norm 3.847901871287e-04
1 KSP Residual norm 5.250297444778e-18
1 SNES Function norm 1.422719845925e-08
Iteration 1 residual: 1.4227198459250043e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.422719845925e-08
1 KSP Residual norm 4.464255726240e-20
2 SNES Function norm 4.356374397819e-13
Iteration 2 residual: 4.3563743978188317e-13
F_reac = -0.0028151516676064234
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 180.0 is 0.0019235038843972783
At growth time 180.00, growth rate is 1.0000511796672502
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.836224679648e-04
Iteration 0 residual: 0.00038362246796481064
Residual norms for tmp_ solve.
0 KSP Residual norm 3.836224679648e-04
1 KSP Residual norm 4.823671944409e-18
1 SNES Function norm 1.414102370596e-08
Iteration 1 residual: 1.4141023705964235e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.414102370596e-08
1 KSP Residual norm 4.496866514869e-20
2 SNES Function norm 4.277821158771e-13
Iteration 2 residual: 4.2778211587706823e-13
F_reac = -0.0028425606560434865
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 181.0 is 0.0019236021843857642
At growth time 181.00, growth rate is 1.0000510216109548
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.824368798521e-04
Iteration 0 residual: 0.00038243687985212616
Residual norms for tmp_ solve.
0 KSP Residual norm 3.824368798521e-04
1 KSP Residual norm 4.888848031517e-18
1 SNES Function norm 1.405379696276e-08
Iteration 1 residual: 1.4053796962756452e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.405379696276e-08
1 KSP Residual norm 4.352040180260e-20
2 SNES Function norm 4.194951967483e-13
Iteration 2 residual: 4.1949519674826005e-13
F_reac = -0.00286988589756683
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 182.0 is 0.0019237001858087375
At growth time 182.00, growth rate is 1.0000508614903922
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.812358282895e-04
Iteration 0 residual: 0.0003812358282895098
Residual norms for tmp_ solve.
0 KSP Residual norm 3.812358282895e-04
1 KSP Residual norm 5.054783993133e-18
1 SNES Function norm 1.396570613257e-08
Iteration 1 residual: 1.396570613257487e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.396570613257e-08
1 KSP Residual norm 4.209779022343e-20
2 SNES Function norm 4.117569137131e-13
Iteration 2 residual: 4.1175691371308217e-13
F_reac = -0.002897126278328968
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 183.0 is 0.0019237978846547777
At growth time 183.00, growth rate is 1.0000506995809568
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.800213774535e-04
Iteration 0 residual: 0.00038002137745346976
Residual norms for tmp_ solve.
0 KSP Residual norm 3.800213774535e-04
1 KSP Residual norm 4.593456975387e-18
1 SNES Function norm 1.387691339810e-08
Iteration 1 residual: 1.3876913398103797e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.387691339810e-08
1 KSP Residual norm 4.434555747413e-20
2 SNES Function norm 4.039686301562e-13
Iteration 2 residual: 4.0396863015620057e-13
F_reac = -0.0029242808318646336
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 184.0 is 0.0019238952774408094
At growth time 184.00, growth rate is 1.0000505361206926
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.787953115683e-04
Iteration 0 residual: 0.0003787953115682936
Residual norms for tmp_ solve.
0 KSP Residual norm 3.787953115683e-04
1 KSP Residual norm 4.766929981529e-18
1 SNES Function norm 1.378755757555e-08
Iteration 1 residual: 1.378755757554886e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.378755757555e-08
1 KSP Residual norm 4.244904091423e-20
2 SNES Function norm 3.963070670903e-13
Iteration 2 residual: 3.9630706709034796e-13
F_reac = -0.0029513487191041754
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 185.0 is 0.0019239923611405218
At growth time 185.00, growth rate is 1.0000503713166622
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.775591826277e-04
Iteration 0 residual: 0.0003775591826276824
Residual norms for tmp_ solve.
0 KSP Residual norm 3.775591826277e-04
1 KSP Residual norm 5.115141188050e-18
1 SNES Function norm 1.369775965890e-08
Iteration 1 residual: 1.3697759658904227e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.369775965890e-08
1 KSP Residual norm 4.192546424242e-20
2 SNES Function norm 3.885149475119e-13
Iteration 2 residual: 3.88514947511919e-13
F_reac = -0.002978329211806981
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 186.0 is 0.001924089133124937
Output written for time 186.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 186.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 186.00, growth rate is 1.0000502053499793
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.763143481290e-04
Iteration 0 residual: 0.0003763143481289998
Residual norms for tmp_ solve.
0 KSP Residual norm 3.763143481290e-04
1 KSP Residual norm 4.680205765370e-18
1 SNES Function norm 1.360762539371e-08
Iteration 1 residual: 1.3607625393712901e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.360762539371e-08
1 KSP Residual norm 3.983209392983e-20
2 SNES Function norm 3.809306386865e-13
Iteration 2 residual: 3.8093063868647335e-13
F_reac = -0.0030052216786821957
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 187.0 is 0.0019241855911126882
At growth time 187.00, growth rate is 1.0000500383798303
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.750620012061e-04
Iteration 0 residual: 0.00037506200120613383
Residual norms for tmp_ solve.
0 KSP Residual norm 3.750620012061e-04
1 KSP Residual norm 4.615074978759e-18
1 SNES Function norm 1.351724657110e-08
Iteration 1 residual: 1.3517246571102012e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.351724657110e-08
1 KSP Residual norm 4.068878654866e-20
2 SNES Function norm 3.733364950032e-13
Iteration 2 residual: 3.7333649500316217e-13
F_reac = -0.003032025573646809
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 188.0 is 0.0019242817331279615
At growth time 188.00, growth rate is 1.0000498705467284
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.738031950267e-04
Iteration 0 residual: 0.0003738031950267222
Residual norms for tmp_ solve.
0 KSP Residual norm 3.738031950267e-04
1 KSP Residual norm 4.841817474594e-18
1 SNES Function norm 1.342670429292e-08
Iteration 1 residual: 1.3426704292921288e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.342670429292e-08
1 KSP Residual norm 4.028440894552e-20
2 SNES Function norm 3.658249049850e-13
Iteration 2 residual: 3.6582490498498165e-13
F_reac = -0.0030587404258506923
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 189.0 is 0.001924377557464695
At growth time 189.00, growth rate is 1.000049701975177
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.725388627507e-04
Iteration 0 residual: 0.00037253886275069505
Residual norms for tmp_ solve.
0 KSP Residual norm 3.725388627507e-04
1 KSP Residual norm 4.652189890458e-18
1 SNES Function norm 1.333607037962e-08
Iteration 1 residual: 1.3336070379620963e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.333607037962e-08
1 KSP Residual norm 3.969036046645e-20
2 SNES Function norm 3.586001002154e-13
Iteration 2 residual: 3.586001002154074e-13
F_reac = -0.0030853658311075227
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 190.0 is 0.0019244730626559038
At growth time 190.00, growth rate is 1.0000495327758656
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.712698340056e-04
Iteration 0 residual: 0.00037126983400564067
Residual norms for tmp_ solve.
0 KSP Residual norm 3.712698340056e-04
1 KSP Residual norm 4.538909498492e-18
1 SNES Function norm 1.324540789641e-08
Iteration 1 residual: 1.3245407896410498e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.324540789641e-08
1 KSP Residual norm 3.978803704068e-20
2 SNES Function norm 3.514854630716e-13
Iteration 2 residual: 3.5148546307160826e-13
F_reac = -0.00311190144450921
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 191.0 is 0.0019245682474471882
At growth time 191.00, growth rate is 1.0000493630475027
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.699968486039e-04
Iteration 0 residual: 0.00036999684860390865
Residual norms for tmp_ solve.
0 KSP Residual norm 3.699968486039e-04
1 KSP Residual norm 4.426714797659e-18
1 SNES Function norm 1.315477275612e-08
Iteration 1 residual: 1.3154772756118396e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.315477275612e-08
1 KSP Residual norm 3.908768656344e-20
2 SNES Function norm 3.443653726779e-13
Iteration 2 residual: 3.4436537267792735e-13
F_reac = -0.0031383469740077327
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 192.0 is 0.0019246631107737418
Output written for time 192.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 192.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9247e-03. Feedback scalar: 0.988
======================================================================
Processing event from t=192 to 193
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=193 to 240
At growth time 193.00, growth rate is 1.0000488041326836
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.658069689672e-04
Iteration 0 residual: 0.0003658069689672474
Residual norms for tmp_ solve.
0 KSP Residual norm 3.658069689672e-04
1 KSP Residual norm 4.688218460203e-18
1 SNES Function norm 1.285852363986e-08
Iteration 1 residual: 1.285852363985617e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.285852363986e-08
1 KSP Residual norm 3.830664288077e-20
2 SNES Function norm 3.215601226727e-13
Iteration 2 residual: 3.215601226726789e-13
F_reac = -0.003164493905128273
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 194.0 is 0.0019247569046324496
Output written for time 194.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 194.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 194.00, growth rate is 1.0000486794134826
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.648713504285e-04
Iteration 0 residual: 0.00036487135042847303
Residual norms for tmp_ solve.
0 KSP Residual norm 3.648713504285e-04
1 KSP Residual norm 4.335469045377e-18
1 SNES Function norm 1.279287431640e-08
Iteration 1 residual: 1.2792874316404674e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.279287431640e-08
1 KSP Residual norm 3.686071196204e-20
2 SNES Function norm 3.168268907643e-13
Iteration 2 residual: 3.1682689076428204e-13
F_reac = -0.003190574836333246
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 195.0 is 0.0019248504633620604
At growth time 195.00, growth rate is 1.0000486197133605
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.644230461260e-04
Iteration 0 residual: 0.0003644230461260274
Residual norms for tmp_ solve.
0 KSP Residual norm 3.644230461260e-04
1 KSP Residual norm 4.300772869236e-18
1 SNES Function norm 1.276150665624e-08
Iteration 1 residual: 1.2761506656240387e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.276150665624e-08
1 KSP Residual norm 3.782225102236e-20
2 SNES Function norm 3.147963452918e-13
Iteration 2 residual: 3.1479634529182507e-13
F_reac = -0.0032166245974475276
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 196.0 is 0.0019249439118964025
At growth time 196.00, growth rate is 1.000048644234891
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.646059716904e-04
Iteration 0 residual: 0.0003646059716904485
Residual norms for tmp_ solve.
0 KSP Residual norm 3.646059716904e-04
1 KSP Residual norm 4.501850460628e-18
1 SNES Function norm 1.277437987289e-08
Iteration 1 residual: 1.2774379872892488e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.277437987289e-08
1 KSP Residual norm 3.854185608647e-20
2 SNES Function norm 3.157779423468e-13
Iteration 2 residual: 3.1577794234681736e-13
F_reac = -0.0032426883113526547
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 197.0 is 0.001925037412103341
At growth time 197.00, growth rate is 1.0000487667225368
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.655231331219e-04
Iteration 0 residual: 0.0003655231331218743
Residual norms for tmp_ solve.
0 KSP Residual norm 3.655231331219e-04
1 KSP Residual norm 4.246361935512e-18
1 SNES Function norm 1.283879782057e-08
Iteration 1 residual: 1.2838797820569036e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.283879782057e-08
1 KSP Residual norm 3.922994074150e-20
2 SNES Function norm 3.207469252209e-13
Iteration 2 residual: 3.207469252209018e-13
F_reac = -0.003268818471061693
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 198.0 is 0.0019251311523020421
At growth time 198.00, growth rate is 1.000048996663237
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.672456252524e-04
Iteration 0 residual: 0.00036724562525239786
Residual norms for tmp_ solve.
0 KSP Residual norm 3.672456252524e-04
1 KSP Residual norm 4.844105946604e-18
1 SNES Function norm 1.296016808678e-08
Iteration 1 residual: 1.2960168086783295e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.296016808678e-08
1 KSP Residual norm 4.047069401001e-20
2 SNES Function norm 3.301980738997e-13
Iteration 2 residual: 3.30198073899694e-13
F_reac = -0.003295072659572013
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 199.0 is 0.0019252253390851873
At growth time 199.00, growth rate is 1.0000493396278582
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.698151910863e-04
Iteration 0 residual: 0.0003698151910863217
Residual norms for tmp_ solve.
0 KSP Residual norm 3.698151910863e-04
1 KSP Residual norm 4.608778273769e-18
1 SNES Function norm 1.314226048964e-08
Iteration 1 residual: 1.3142260489641493e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.314226048964e-08
1 KSP Residual norm 3.815633300812e-20
2 SNES Function norm 3.441969128112e-13
Iteration 2 residual: 3.4419691281116205e-13
F_reac = -0.003321511452281908
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 200.0 is 0.0019253201897954674
At growth time 200.00, growth rate is 1.0000497969817108
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.732420525469e-04
Iteration 0 residual: 0.0003732420525468657
Residual norms for tmp_ solve.
0 KSP Residual norm 3.732420525469e-04
1 KSP Residual norm 4.540521735929e-18
1 SNES Function norm 1.338706538074e-08
Iteration 1 residual: 1.3387065380742903e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.338706538074e-08
1 KSP Residual norm 3.902186018446e-20
2 SNES Function norm 3.641498682703e-13
Iteration 2 residual: 3.641498682702746e-13
F_reac = -0.0033481961639313254
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 201.0 is 0.0019254159244435542
At growth time 201.00, growth rate is 1.0000503650734809
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.774988322890e-04
Iteration 0 residual: 0.0003774988322890397
Residual norms for tmp_ solve.
0 KSP Residual norm 3.774988322890e-04
1 KSP Residual norm 4.492116444795e-18
1 SNES Function norm 1.369429389996e-08
Iteration 1 residual: 1.3694293899959554e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.369429389996e-08
1 KSP Residual norm 4.140927070629e-20
2 SNES Function norm 3.902543111175e-13
Iteration 2 residual: 3.902543111174846e-13
F_reac = -0.0033751861605465774
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 202.0 is 0.0019255127560646246
At growth time 202.00, growth rate is 1.0000510339471482
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.825109007802e-04
Iteration 0 residual: 0.00038251090078020793
Residual norms for tmp_ solve.
0 KSP Residual norm 3.825109007802e-04
1 KSP Residual norm 4.919904263087e-18
1 SNES Function norm 1.406049834880e-08
Iteration 1 residual: 1.406049834879637e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.406049834880e-08
1 KSP Residual norm 4.360440829647e-20
2 SNES Function norm 4.237547024046e-13
Iteration 2 residual: 4.2375470240456706e-13
F_reac = -0.0034025354806055085
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 203.0 is 0.001925610878595643
At growth time 203.00, growth rate is 1.000051785587836
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.881432308812e-04
Iteration 0 residual: 0.00038814323088120253
Residual norms for tmp_ solve.
0 KSP Residual norm 3.881432308812e-04
1 KSP Residual norm 4.560222682291e-18
1 SNES Function norm 1.447778912165e-08
Iteration 1 residual: 1.4477789121652484e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.447778912165e-08
1 KSP Residual norm 4.751349235223e-20
2 SNES Function norm 4.641949641276e-13
Iteration 2 residual: 4.641949641275746e-13
F_reac = -0.003430288515509788
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 204.0 is 0.0019257104513762389
Output written for time 204.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 204.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 204.00, growth rate is 1.0000525841948473
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 3.941275000443e-04
Iteration 0 residual: 0.0003941275000443042
Residual norms for tmp_ solve.
0 KSP Residual norm 3.941275000443e-04
1 KSP Residual norm 4.856676184869e-18
1 SNES Function norm 1.492784778075e-08
Iteration 1 residual: 1.4927847780754724e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.492784778075e-08
1 KSP Residual norm 4.878060607427e-20
2 SNES Function norm 5.113935271423e-13
Iteration 2 residual: 5.113935271422802e-13
F_reac = -0.0034584704761725154
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 205.0 is 0.0019258115649409234
At growth time 205.00, growth rate is 1.0000536093588588
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.018096540322e-04
Iteration 0 residual: 0.0004018096540322288
Residual norms for tmp_ solve.
0 KSP Residual norm 4.018096540322e-04
1 KSP Residual norm 5.104464848187e-18
1 SNES Function norm 1.551569384431e-08
Iteration 1 residual: 1.551569384430651e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.551569384431e-08
1 KSP Residual norm 4.997067197645e-20
2 SNES Function norm 5.789049992016e-13
Iteration 2 residual: 5.789049992015855e-13
F_reac = -0.003487202829646824
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 206.0 is 0.0019259146551975591
At growth time 206.00, growth rate is 1.000055791315233
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.181613056820e-04
Iteration 0 residual: 0.0004181613056819956
Residual norms for tmp_ solve.
0 KSP Residual norm 4.181613056820e-04
1 KSP Residual norm 5.180026653683e-18
1 SNES Function norm 1.680471656407e-08
Iteration 1 residual: 1.680471656407341e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.680471656407e-08
1 KSP Residual norm 6.191810427444e-20
2 SNES Function norm 7.517119029397e-13
Iteration 2 residual: 7.517119029397277e-13
F_reac = -0.003517105639622272
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 207.0 is 0.001926021947080234
At growth time 207.00, growth rate is 1.0000577363924206
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.327374496820e-04
Iteration 0 residual: 0.00043273744968195404
Residual norms for tmp_ solve.
0 KSP Residual norm 4.327374496820e-04
1 KSP Residual norm 5.839401362487e-18
1 SNES Function norm 1.799723085613e-08
Iteration 1 residual: 1.7997230856126977e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.799723085613e-08
1 KSP Residual norm 6.599031236311e-20
2 SNES Function norm 9.489947775091e-13
Iteration 2 residual: 9.48994777509125e-13
F_reac = -0.0035480520647820997
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 208.0 is 0.0019261329857156622
At growth time 208.00, growth rate is 1.000059096164311
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.429268970385e-04
Iteration 0 residual: 0.0004429268970385057
Residual norms for tmp_ solve.
0 KSP Residual norm 4.429268970385e-04
1 KSP Residual norm 5.207935862049e-18
1 SNES Function norm 1.885522335615e-08
Iteration 1 residual: 1.885522335614923e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.885522335615e-08
1 KSP Residual norm 7.113220018460e-20
2 SNES Function norm 1.117054682279e-12
Iteration 2 residual: 1.1170546822789659e-12
F_reac = -0.003579728490153353
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 209.0 is 0.0019262466460201618
At growth time 209.00, growth rate is 1.0000599277187379
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.491575819941e-04
Iteration 0 residual: 0.0004491575819941309
Residual norms for tmp_ solve.
0 KSP Residual norm 4.491575819941e-04
1 KSP Residual norm 5.415696993971e-18
1 SNES Function norm 1.938978579304e-08
Iteration 1 residual: 1.9389785793044074e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.938978579304e-08
1 KSP Residual norm 8.258114650797e-20
2 SNES Function norm 1.234423285093e-12
Iteration 2 residual: 1.2344232850933628e-12
F_reac = -0.0036118518576552625
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 210.0 is 0.0019263619124673748
At growth time 210.00, growth rate is 1.0000604245083142
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.528793703294e-04
Iteration 0 residual: 0.0004528793703294357
Residual norms for tmp_ solve.
0 KSP Residual norm 4.528793703294e-04
1 KSP Residual norm 5.363868350261e-18
1 SNES Function norm 1.971271842534e-08
Iteration 1 residual: 1.9712718425342206e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.971271842534e-08
1 KSP Residual norm 7.538816276622e-20
2 SNES Function norm 1.310787403976e-12
Iteration 2 residual: 1.3107874039764242e-12
F_reac = -0.0036442427677044827
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 211.0 is 0.00192647814141021
At growth time 211.00, growth rate is 1.0000607117775746
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.550309186581e-04
Iteration 0 residual: 0.0004550309186581085
Residual norms for tmp_ solve.
0 KSP Residual norm 4.550309186581e-04
1 KSP Residual norm 6.068712185858e-18
1 SNES Function norm 1.990067186686e-08
Iteration 1 residual: 1.9900671866857997e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.990067186686e-08
1 KSP Residual norm 7.949228867427e-20
2 SNES Function norm 1.357566925935e-12
Iteration 2 residual: 1.357566925935022e-12
F_reac = -0.0036767889335023412
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 212.0 is 0.0019265949299767187
At growth time 212.00, growth rate is 1.0000608628212877
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.561615384133e-04
Iteration 0 residual: 0.0004561615384132947
Residual norms for tmp_ solve.
0 KSP Residual norm 4.561615384133e-04
1 KSP Residual norm 5.567728237432e-18
1 SNES Function norm 1.999985158326e-08
Iteration 1 residual: 1.9999851583262063e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.999985158326e-08
1 KSP Residual norm 7.778515968274e-20
2 SNES Function norm 1.382999700577e-12
Iteration 2 residual: 1.3829997005771415e-12
F_reac = -0.0037094173436895066
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 213.0 is 0.0019267120162007759
At growth time 213.00, growth rate is 1.0000609224757933
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.566072565322e-04
Iteration 0 residual: 0.000456607256532188
Residual norms for tmp_ solve.
0 KSP Residual norm 4.566072565322e-04
1 KSP Residual norm 5.436369441760e-18
1 SNES Function norm 2.003908621751e-08
Iteration 1 residual: 2.0039086217507194e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.003908621751e-08
1 KSP Residual norm 7.914532803584e-20
2 SNES Function norm 1.393645983304e-12
Iteration 2 residual: 1.3936459833040923e-12
F_reac = -0.0037420790129070527
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 214.0 is 0.001926829224313037
Output written for time 214.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 214.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 214.00, growth rate is 1.0000609191015228
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.565806202706e-04
Iteration 0 residual: 0.00045658062027062224
Residual norms for tmp_ solve.
0 KSP Residual norm 4.565806202706e-04
1 KSP Residual norm 5.592924811393e-18
1 SNES Function norm 2.003685813549e-08
Iteration 1 residual: 2.0036858135486467e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.003685813549e-08
1 KSP Residual norm 8.297214597419e-20
2 SNES Function norm 1.393702312873e-12
Iteration 2 residual: 1.3937023128734514e-12
F_reac = -0.0037747401531365897
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 215.0 is 0.0019269464330671333
At growth time 215.00, growth rate is 1.0000608711262906
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.562197365708e-04
Iteration 0 residual: 0.00045621973657075703
Residual norms for tmp_ solve.
0 KSP Residual norm 4.562197365708e-04
1 KSP Residual norm 5.577888831996e-18
1 SNES Function norm 2.000529016589e-08
Iteration 1 residual: 2.0005290165888404e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.000529016589e-08
1 KSP Residual norm 7.889050091356e-20
2 SNES Function norm 1.386443751759e-12
Iteration 2 residual: 1.3864437517588227e-12
F_reac = -0.003807376851228162
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 216.0 is 0.001927063556644544
At growth time 216.00, growth rate is 1.0000607908061765
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.556164582760e-04
Iteration 0 residual: 0.0004556164582760374
Residual norms for tmp_ solve.
0 KSP Residual norm 4.556164582760e-04
1 KSP Residual norm 5.546407250062e-18
1 SNES Function norm 1.995250052052e-08
Iteration 1 residual: 1.9952500520524056e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.995250052052e-08
1 KSP Residual norm 7.836698568404e-20
2 SNES Function norm 1.373652255419e-12
Iteration 2 residual: 1.3736522554186784e-12
F_reac = -0.0038399717617134174
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 217.0 is 0.001927180532789522
At growth time 217.00, growth rate is 1.000060686470471
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.548332089480e-04
Iteration 0 residual: 0.00045483320894799457
Residual norms for tmp_ solve.
0 KSP Residual norm 4.548332089480e-04
1 KSP Residual norm 5.524345548024e-18
1 SNES Function norm 1.988403341434e-08
Iteration 1 residual: 1.9884033414341067e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.988403341434e-08
1 KSP Residual norm 8.144733760761e-20
2 SNES Function norm 1.357105138320e-12
Iteration 2 residual: 1.3571051383202696e-12
F_reac = -0.003872512002538353
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 218.0 is 0.001927297315259751
At growth time 218.00, growth rate is 1.0000605639000304
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.539133129689e-04
Iteration 0 residual: 0.0004539133129689235
Residual norms for tmp_ solve.
0 KSP Residual norm 4.539133129689e-04
1 KSP Residual norm 5.660474672347e-18
1 SNES Function norm 1.980375213932e-08
Iteration 1 residual: 1.9803752139320446e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.980375213932e-08
1 KSP Residual norm 7.860656865306e-20
2 SNES Function norm 1.337996066469e-12
Iteration 2 residual: 1.3379960664687909e-12
F_reac = -0.003904987789458776
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 219.0 is 0.001927413868926843
At growth time 219.00, growth rate is 1.000060427192139
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.528874772603e-04
Iteration 0 residual: 0.0004528874772602981
Residual norms for tmp_ solve.
0 KSP Residual norm 4.528874772603e-04
1 KSP Residual norm 5.501834398222e-18
1 SNES Function norm 1.971440424779e-08
Iteration 1 residual: 1.9714404247786413e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.971440424779e-08
1 KSP Residual norm 7.464387273871e-20
2 SNES Function norm 1.316929471312e-12
Iteration 2 residual: 1.3169294713117364e-12
F_reac = -0.0039373915338293194
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 220.0 is 0.0019275301665395786
At growth time 220.00, growth rate is 1.0000602793128237
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.517779305719e-04
Iteration 0 residual: 0.00045177793057193824
Residual norms for tmp_ solve.
0 KSP Residual norm 4.517779305719e-04
1 KSP Residual norm 5.720757027647e-18
1 SNES Function norm 1.961798372873e-08
Iteration 1 residual: 1.9617983728727288e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.961798372873e-08
1 KSP Residual norm 7.623566018078e-20
2 SNES Function norm 1.294462027699e-12
Iteration 2 residual: 1.2944620276985993e-12
F_reac = -0.003969717236406352
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 221.0 is 0.0019276461865489864
At growth time 221.00, growth rate is 1.0000601224550019
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.506011076160e-04
Iteration 0 residual: 0.00045060110761601844
Residual norms for tmp_ solve.
0 KSP Residual norm 4.506011076160e-04
1 KSP Residual norm 5.312905929459e-18
1 SNES Function norm 1.951596848196e-08
Iteration 1 residual: 1.951596848196004e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.951596848196e-08
1 KSP Residual norm 7.669533285530e-20
2 SNES Function norm 1.270922179227e-12
Iteration 2 residual: 1.270922179226561e-12
F_reac = -0.004001960073053158
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 222.0 is 0.0019277619116219826
At growth time 222.00, growth rate is 1.0000599582740264
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.493694143574e-04
Iteration 0 residual: 0.0004493694143573821
Residual norms for tmp_ solve.
0 KSP Residual norm 4.493694143574e-04
1 KSP Residual norm 5.439559175844e-18
1 SNES Function norm 1.940947714686e-08
Iteration 1 residual: 1.940947714686206e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.940947714686e-08
1 KSP Residual norm 7.313944819828e-20
2 SNES Function norm 1.246552544318e-12
Iteration 2 residual: 1.2465525443182121e-12
F_reac = -0.004034116106678194
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 223.0 is 0.00192787732760793
At growth time 223.00, growth rate is 1.0000597880447515
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.480924051199e-04
Iteration 0 residual: 0.0004480924051198593
Residual norms for tmp_ solve.
0 KSP Residual norm 4.480924051199e-04
1 KSP Residual norm 5.469505122166e-18
1 SNES Function norm 1.929937083098e-08
Iteration 1 residual: 1.9299370830984474e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.929937083098e-08
1 KSP Residual norm 7.484964652454e-20
2 SNES Function norm 1.221978326098e-12
Iteration 2 residual: 1.2219783260976376e-12
F_reac = -0.0040661820833338205
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 224.0 is 0.0019279924228070848
Output written for time 224.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 224.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 224.00, growth rate is 1.000059612767749
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.467775786328e-04
Iteration 0 residual: 0.00044677757863278864
Residual norms for tmp_ solve.
0 KSP Residual norm 4.467775786328e-04
1 KSP Residual norm 5.626315127163e-18
1 SNES Function norm 1.918632827308e-08
Iteration 1 residual: 1.918632827307758e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.918632827308e-08
1 KSP Residual norm 7.191765290206e-20
2 SNES Function norm 1.197376438359e-12
Iteration 2 residual: 1.1973764383590453e-12
F_reac = -0.004098155285258465
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 225.0 is 0.0019281071874433725
At growth time 225.00, growth rate is 1.0000594332421857
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.454309241892e-04
Iteration 0 residual: 0.000445430924189202
Residual norms for tmp_ solve.
0 KSP Residual norm 4.454309241892e-04
1 KSP Residual norm 5.391833067285e-18
1 SNES Function norm 1.907089079249e-08
Iteration 1 residual: 1.9070890792489376e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.907089079249e-08
1 KSP Residual norm 7.354983546061e-20
2 SNES Function norm 1.172371391861e-12
Iteration 2 residual: 1.1723713918605048e-12
F_reac = -0.004130033422937589
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 226.0 is 0.0019282216132771582
At growth time 226.00, growth rate is 1.000059250116591
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.440573021358e-04
Iteration 0 residual: 0.00044405730213582307
Residual norms for tmp_ solve.
0 KSP Residual norm 4.440573021358e-04
1 KSP Residual norm 5.790767989719e-18
1 SNES Function norm 1.895349875972e-08
Iteration 1 residual: 1.895349875972189e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.895349875972e-08
1 KSP Residual norm 6.979144211964e-20
2 SNES Function norm 1.147358598070e-12
Iteration 2 residual: 1.1473585980699413e-12
F_reac = -0.004161814554403952
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 227.0 is 0.0019283356933157312
At growth time 227.00, growth rate is 1.0000590639247862
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.426607131443e-04
Iteration 0 residual: 0.0004426607131443207
Residual norms for tmp_ solve.
0 KSP Residual norm 4.426607131443e-04
1 KSP Residual norm 5.094959080422e-18
1 SNES Function norm 1.883451362069e-08
Iteration 1 residual: 1.8834513620692625e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.883451362069e-08
1 KSP Residual norm 7.027696308577e-20
2 SNES Function norm 1.122770858191e-12
Iteration 2 residual: 1.1227708581909306e-12
F_reac = -0.004193497023773783
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 228.0 is 0.0019284494215927967
At growth time 228.00, growth rate is 1.000058875111726
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.412444918597e-04
Iteration 0 residual: 0.0004412444918597078
Residual norms for tmp_ solve.
0 KSP Residual norm 4.412444918597e-04
1 KSP Residual norm 5.617435497423e-18
1 SNES Function norm 1.871423715614e-08
Iteration 1 residual: 1.8714237156140876e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.871423715614e-08
1 KSP Residual norm 6.918306193743e-20
2 SNES Function norm 1.097780491836e-12
Iteration 2 residual: 1.0977804918357024e-12
F_reac = -0.004225079413626189
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 229.0 is 0.0019285627929976597
At growth time 229.00, growth rate is 1.0000586840523955
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.398114485532e-04
Iteration 0 residual: 0.0004398114485531853
Residual norms for tmp_ solve.
0 KSP Residual norm 4.398114485532e-04
1 KSP Residual norm 5.328588984554e-18
1 SNES Function norm 1.859292292791e-08
Iteration 1 residual: 1.859292292791478e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.859292292791e-08
1 KSP Residual norm 7.308827157433e-20
2 SNES Function norm 1.073730727325e-12
Iteration 2 residual: 1.073730727324881e-12
F_reac = -0.0042565605075193195
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 230.0 is 0.001928675803140765
At growth time 230.00, growth rate is 1.0000584910658554
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.383639743582e-04
Iteration 0 residual: 0.0004383639743581768
Residual norms for tmp_ solve.
0 KSP Residual norm 4.383639743582e-04
1 KSP Residual norm 5.524540374308e-18
1 SNES Function norm 1.847078646016e-08
Iteration 1 residual: 1.8470786460163783e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.847078646016e-08
1 KSP Residual norm 7.149538229037e-20
2 SNES Function norm 1.049857348222e-12
Iteration 2 residual: 1.049857348221649e-12
F_reac = -0.004287939260036098
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 231.0 is 0.0019287884482461996
At growth time 231.00, growth rate is 1.0000582964258549
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.369041208173e-04
Iteration 0 residual: 0.00043690412081734414
Residual norms for tmp_ solve.
0 KSP Residual norm 4.369041208173e-04
1 KSP Residual norm 5.302255615988e-18
1 SNES Function norm 1.834801248964e-08
Iteration 1 residual: 1.8348012489639502e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.834801248964e-08
1 KSP Residual norm 6.786298483553e-20
2 SNES Function norm 1.025999082471e-12
Iteration 2 residual: 1.0259990824707374e-12
F_reac = -0.0043192147724950385
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 232.0 is 0.0019289007250646213
At growth time 232.00, growth rate is 1.0000581003689721
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.354336608986e-04
Iteration 0 residual: 0.0004354336608985801
Residual norms for tmp_ solve.
0 KSP Residual norm 4.354336608986e-04
1 KSP Residual norm 5.177147844164e-18
1 SNES Function norm 1.822475959600e-08
Iteration 1 residual: 1.8224759596000617e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.822475959600e-08
1 KSP Residual norm 6.677597411392e-20
2 SNES Function norm 1.002528290023e-12
Iteration 2 residual: 1.0025282900225032e-12
F_reac = -0.004350386273047809
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 233.0 is 0.0019290126308018159
At growth time 233.00, growth rate is 1.000057903100955
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.339541365073e-04
Iteration 0 residual: 0.0004339541365072764
Residual norms for tmp_ solve.
0 KSP Residual norm 4.339541365073e-04
1 KSP Residual norm 5.950778087528e-18
1 SNES Function norm 1.810116581822e-08
Iteration 1 residual: 1.8101165818217244e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.810116581822e-08
1 KSP Residual norm 7.024708393967e-20
2 SNES Function norm 9.797877790698e-13
Iteration 2 residual: 9.797877790697603e-13
F_reac = -0.004381453100156791
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 234.0 is 0.0019291241630594632
Output written for time 234.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 234.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 234.00, growth rate is 1.0000577048017267
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.324668959987e-04
Iteration 0 residual: 0.00043246689599865174
Residual norms for tmp_ solve.
0 KSP Residual norm 4.324668959987e-04
1 KSP Residual norm 5.564393106565e-18
1 SNES Function norm 1.797735026459e-08
Iteration 1 residual: 1.7977350264589282e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.797735026459e-08
1 KSP Residual norm 6.496556633354e-20
2 SNES Function norm 9.572606434660e-13
Iteration 2 residual: 9.57260643466037e-13
F_reac = -0.004412414688764452
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 235.0 is 0.001929235319785509
At growth time 235.00, growth rate is 1.000057505629388
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.309731241911e-04
Iteration 0 residual: 0.0004309731241911109
Residual norms for tmp_ solve.
0 KSP Residual norm 4.309731241911e-04
1 KSP Residual norm 5.655490229524e-18
1 SNES Function norm 1.785341840760e-08
Iteration 1 residual: 1.7853418407600948e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.785341840760e-08
1 KSP Residual norm 6.411050865798e-20
2 SNES Function norm 9.353064266552e-13
Iteration 2 residual: 9.353064266552297e-13
F_reac = -0.004443270558598843
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 236.0 is 0.0019293460992321995
At growth time 236.00, growth rate is 1.0000573057234572
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.294738666173e-04
Iteration 0 residual: 0.0004294738666173486
Residual norms for tmp_ solve.
0 KSP Residual norm 4.294738666173e-04
1 KSP Residual norm 5.289183621649e-18
1 SNES Function norm 1.772946204997e-08
Iteration 1 residual: 1.7729462049967457e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.772946204997e-08
1 KSP Residual norm 6.432336431577e-20
2 SNES Function norm 9.134813551979e-13
Iteration 2 residual: 9.13481355197912e-13
F_reac = -0.004474020304222761
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 237.0 is 0.0019294564999204308
At growth time 237.00, growth rate is 1.0000571052075178
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.279700493985e-04
Iteration 0 residual: 0.00042797004939852326
Residual norms for tmp_ solve.
0 KSP Residual norm 4.279700493985e-04
1 KSP Residual norm 5.285258981527e-18
1 SNES Function norm 1.760556233715e-08
Iteration 1 residual: 1.7605562337146064e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.760556233715e-08
1 KSP Residual norm 6.292203339611e-20
2 SNES Function norm 8.923469684504e-13
Iteration 2 residual: 8.923469684503919e-13
F_reac = -0.004504663586495446
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 238.0 is 0.0019295665206090717
At growth time 238.00, growth rate is 1.0000569041914065
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.264624956250e-04
Iteration 0 residual: 0.00042646249562495374
Residual norms for tmp_ solve.
0 KSP Residual norm 4.264624956250e-04
1 KSP Residual norm 5.011191987619e-18
1 SNES Function norm 1.748179069677e-08
Iteration 1 residual: 1.748179069677124e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.748179069677e-08
1 KSP Residual norm 6.216043505350e-20
2 SNES Function norm 8.713763509476e-13
Iteration 2 residual: 8.713763509475925e-13
F_reac = -0.004535200125208615
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 239.0 is 0.0019296761602685892
At growth time 239.00, growth rate is 1.0000567027730347
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.249519390113e-04
Iteration 0 residual: 0.0004249519390113408
Residual norms for tmp_ solve.
0 KSP Residual norm 4.249519390113e-04
1 KSP Residual norm 5.327144820677e-18
1 SNES Function norm 1.735820962679e-08
Iteration 1 residual: 1.7358209626789944e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.735820962679e-08
1 KSP Residual norm 6.063426182735e-20
2 SNES Function norm 8.514728670966e-13
Iteration 2 residual: 8.514728670966095e-13
F_reac = -0.004565629692695631
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 240.0 is 0.0019297854180581103
Output written for time 240.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 240.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9298e-03. Feedback scalar: 0.983
======================================================================
Processing event from t=240 to 241
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=241 to 288
At growth time 241.00, growth rate is 1.0000560030119123
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.197069397640e-04
Iteration 0 residual: 0.00041970693976401893
Residual norms for tmp_ solve.
0 KSP Residual norm 4.197069397640e-04
1 KSP Residual norm 5.246757956938e-18
1 SNES Function norm 1.693229861304e-08
Iteration 1 residual: 1.6932298613039204e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.693229861304e-08
1 KSP Residual norm 5.799076623039e-20
2 SNES Function norm 7.832667233693e-13
Iteration 2 residual: 7.832667233693103e-13
F_reac = -0.004595684834078054
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 242.0 is 0.0019298933336254378
Output written for time 242.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 242.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 242.00, growth rate is 1.0000558469972074
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.185366675203e-04
Iteration 0 residual: 0.00041853666752028146
Residual norms for tmp_ solve.
0 KSP Residual norm 4.185366675203e-04
1 KSP Residual norm 5.330635605798e-18
1 SNES Function norm 1.683805752655e-08
Iteration 1 residual: 1.683805752655106e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.683805752655e-08
1 KSP Residual norm 6.276151176318e-20
2 SNES Function norm 7.691369650984e-13
Iteration 2 residual: 7.691369650983522e-13
F_reac = -0.004625657328751077
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 243.0 is 0.001930000954579843
At growth time 243.00, growth rate is 1.0000557557042102
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.178514103908e-04
Iteration 0 residual: 0.00041785141039082024
Residual norms for tmp_ solve.
0 KSP Residual norm 4.178514103908e-04
1 KSP Residual norm 5.305804375064e-18
1 SNES Function norm 1.678303125401e-08
Iteration 1 residual: 1.6783031254012487e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.678303125401e-08
1 KSP Residual norm 5.853549159068e-20
2 SNES Function norm 7.613198321591e-13
Iteration 2 residual: 7.613198321591384e-13
F_reac = -0.004655581904187414
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 244.0 is 0.0019301084056013679
At growth time 244.00, growth rate is 1.0000557482079289
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.177941058600e-04
Iteration 0 residual: 0.000417794105859963
Residual norms for tmp_ solve.
0 KSP Residual norm 4.177941058600e-04
1 KSP Residual norm 4.996015503167e-18
1 SNES Function norm 1.677851147191e-08
Iteration 1 residual: 1.6778511471914825e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.677851147191e-08
1 KSP Residual norm 5.929556286453e-20
2 SNES Function norm 7.607375060981e-13
Iteration 2 residual: 7.607375060980575e-13
F_reac = -0.004685503530819728
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 245.0 is 0.001930215848160869
At growth time 245.00, growth rate is 1.0000558381591311
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.184670415886e-04
Iteration 0 residual: 0.00041846704158859493
Residual norms for tmp_ solve.
0 KSP Residual norm 4.184670415886e-04
1 KSP Residual norm 4.959645845520e-18
1 SNES Function norm 1.683270867994e-08
Iteration 1 residual: 1.6832708679937704e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.683270867994e-08
1 KSP Residual norm 5.836709962377e-20
2 SNES Function norm 7.694817896090e-13
Iteration 2 residual: 7.694817896090332e-13
F_reac = -0.0047154745124856675
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 246.0 is 0.0019303234700755718
At growth time 246.00, growth rate is 1.0000560349776526
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.199407980448e-04
Iteration 0 residual: 0.00041994079804480233
Residual norms for tmp_ solve.
0 KSP Residual norm 4.199407980448e-04
1 KSP Residual norm 5.174488379469e-18
1 SNES Function norm 1.695160782332e-08
Iteration 1 residual: 1.6951607823323134e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.695160782332e-08
1 KSP Residual norm 5.829650910881e-20
2 SNES Function norm 7.881221059978e-13
Iteration 2 residual: 7.881221059977761e-13
F_reac = -0.004745552216750311
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 247.0 is 0.0019304314773613107
At growth time 247.00, growth rate is 1.0000563441920072
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.222567937340e-04
Iteration 0 residual: 0.00042225679373396487
Residual norms for tmp_ solve.
0 KSP Residual norm 4.222567937340e-04
1 KSP Residual norm 5.073574799822e-18
1 SNES Function norm 1.713925595561e-08
Iteration 1 residual: 1.7139255955608506e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.713925595561e-08
1 KSP Residual norm 5.891842543174e-20
2 SNES Function norm 8.181454729259e-13
Iteration 2 residual: 8.181454729258748e-13
F_reac = -0.004775796987058388
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 248.0 is 0.0019305400867368615
At growth time 248.00, growth rate is 1.0000567671521183
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.254251329014e-04
Iteration 0 residual: 0.0004254251329013948
Residual norms for tmp_ solve.
0 KSP Residual norm 4.254251329014e-04
1 KSP Residual norm 5.071844421950e-18
1 SNES Function norm 1.739760950062e-08
Iteration 1 residual: 1.7397609500622444e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.739760950062e-08
1 KSP Residual norm 6.403474845829e-20
2 SNES Function norm 8.608366086652e-13
Iteration 2 residual: 8.608366086651555e-13
F_reac = -0.004806269900274856
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 249.0 is 0.0019306495175723287
At growth time 249.00, growth rate is 1.0000573002238802
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.294185705057e-04
Iteration 0 residual: 0.00042941857050570966
Residual norms for tmp_ solve.
0 KSP Residual norm 4.294185705057e-04
1 KSP Residual norm 5.177743270889e-18
1 SNES Function norm 1.772598155709e-08
Iteration 1 residual: 1.772598155708679e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.772598155709e-08
1 KSP Residual norm 6.466233068443e-20
2 SNES Function norm 9.178502828843e-13
Iteration 2 residual: 9.178502828843422e-13
F_reac = -0.0048370300914252
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 250.0 is 0.0019307599822822187
At growth time 250.00, growth rate is 1.000057933509882
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.341629268143e-04
Iteration 0 residual: 0.0004341629268143489
Residual norms for tmp_ solve.
0 KSP Residual norm 4.341629268143e-04
1 KSP Residual norm 5.273961534388e-18
1 SNES Function norm 1.812008468877e-08
Iteration 1 residual: 1.8120084688769744e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.812008468877e-08
1 KSP Residual norm 6.711266113067e-20
2 SNES Function norm 9.903532492933e-13
Iteration 2 residual: 9.903532492932604e-13
F_reac = -0.004868131391114984
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 251.0 is 0.0019308716742492363
At growth time 251.00, growth rate is 1.0000586491072299
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.395240337626e-04
Iteration 0 residual: 0.0004395240337626078
Residual norms for tmp_ solve.
0 KSP Residual norm 4.395240337626e-04
1 KSP Residual norm 5.588227078673e-18
1 SNES Function norm 1.857063827919e-08
Iteration 1 residual: 1.8570638279192563e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.857063827919e-08
1 KSP Residual norm 6.930985185919e-20
2 SNES Function norm 1.079361188268e-12
Iteration 2 residual: 1.0793611882684112e-12
F_reac = -0.0048996180269149535
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 252.0 is 0.001930984752384964
Output written for time 252.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 252.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 252.00, growth rate is 1.0000594117204307
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.452373949744e-04
Iteration 0 residual: 0.0004452373949743731
Residual norms for tmp_ solve.
0 KSP Residual norm 4.452373949744e-04
1 KSP Residual norm 5.317790943688e-18
1 SNES Function norm 1.905689972115e-08
Iteration 1 residual: 1.905689972114589e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.905689972115e-08
1 KSP Residual norm 7.291942295325e-20
2 SNES Function norm 1.183012846404e-12
Iteration 2 residual: 1.1830128464042843e-12
F_reac = -0.004931515284055545
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 253.0 is 0.001931099307585304
At growth time 253.00, growth rate is 1.0000603994836066
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.526378354976e-04
Iteration 0 residual: 0.0004526378354976138
Residual norms for tmp_ solve.
0 KSP Residual norm 4.526378354976e-04
1 KSP Residual norm 5.345196572631e-18
1 SNES Function norm 1.969609092507e-08
Iteration 1 residual: 1.9696090925069797e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 1.969609092507e-08
1 KSP Residual norm 7.511235175481e-20
2 SNES Function norm 1.332354383127e-12
Iteration 2 residual: 1.3323543831268851e-12
F_reac = -0.004963944092355178
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.24 seconds.
CSA at time 254.0 is 0.0019312157742619215
At growth time 254.00, growth rate is 1.0000625362352233
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.686479648887e-04
Iteration 0 residual: 0.0004686479648886961
Residual norms for tmp_ solve.
0 KSP Residual norm 4.686479648887e-04
1 KSP Residual norm 5.859958908639e-18
1 SNES Function norm 2.111500482168e-08
Iteration 1 residual: 2.1115004821676505e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.111500482168e-08
1 KSP Residual norm 8.815537140628e-20
2 SNES Function norm 1.723803998713e-12
Iteration 2 residual: 1.7238039987131936e-12
F_reac = -0.004997521428745547
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 255.0 is 0.0019313363684547568
At growth time 255.00, growth rate is 1.000064437687777
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.828946902704e-04
Iteration 0 residual: 0.0004828946902703892
Residual norms for tmp_ solve.
0 KSP Residual norm 4.828946902704e-04
1 KSP Residual norm 5.863254714480e-18
1 SNES Function norm 2.241933411681e-08
Iteration 1 residual: 2.2419334116807816e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.241933411681e-08
1 KSP Residual norm 1.035145218049e-19
2 SNES Function norm 2.173803104038e-12
Iteration 2 residual: 2.173803104037661e-12
F_reac = -0.005032121087918671
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.24 seconds.
CSA at time 256.0 is 0.0019314606371512524
At growth time 256.00, growth rate is 1.0000657577270335
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.927845485718e-04
Iteration 0 residual: 0.0004927845485718036
Residual norms for tmp_ solve.
0 KSP Residual norm 4.927845485718e-04
1 KSP Residual norm 6.845573729759e-18
1 SNES Function norm 2.334793963872e-08
Iteration 1 residual: 2.3347939638716006e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.334793963872e-08
1 KSP Residual norm 1.072814501032e-19
2 SNES Function norm 2.558364321616e-12
Iteration 2 residual: 2.5583643216160155e-12
F_reac = -0.005067430997475345
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 257.0 is 0.001931587459719884
At growth time 257.00, growth rate is 1.0000665530961708
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.987428293284e-04
Iteration 0 residual: 0.0004987428293284212
Residual norms for tmp_ solve.
0 KSP Residual norm 4.987428293284e-04
1 KSP Residual norm 6.034539918810e-18
1 SNES Function norm 2.391660797046e-08
Iteration 1 residual: 2.3916607970463633e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.391660797046e-08
1 KSP Residual norm 1.129075562662e-19
2 SNES Function norm 2.825094544596e-12
Iteration 2 residual: 2.825094544596108e-12
F_reac = -0.005103169506034972
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 258.0 is 0.0019317158246966802
At growth time 258.00, growth rate is 1.000067015995963
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.022097982878e-04
Iteration 0 residual: 0.0005022097982878383
Residual norms for tmp_ solve.
0 KSP Residual norm 5.022097982878e-04
1 KSP Residual norm 6.067712128444e-18
1 SNES Function norm 2.425073818393e-08
Iteration 1 residual: 2.4250738183925206e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.425073818393e-08
1 KSP Residual norm 1.197625383395e-19
2 SNES Function norm 2.994552325458e-12
Iteration 2 residual: 2.994552325458151e-12
F_reac = -0.005139158129145195
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 259.0 is 0.0019318450910906838
At growth time 259.00, growth rate is 1.0000672708582368
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.041178798164e-04
Iteration 0 residual: 0.0005041178798164016
Residual norms for tmp_ solve.
0 KSP Residual norm 5.041178798164e-04
1 KSP Residual norm 5.969338763562e-18
1 SNES Function norm 2.443569602898e-08
Iteration 1 residual: 2.4435696028980544e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.443569602898e-08
1 KSP Residual norm 1.174862582603e-19
2 SNES Function norm 3.093430721230e-12
Iteration 2 residual: 3.0934307212303563e-12
F_reac = -0.005175285176085801
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 260.0 is 0.0019319748577733568
At growth time 260.00, growth rate is 1.0000673905017903
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.050127354211e-04
Iteration 0 residual: 0.0005050127354211137
Residual norms for tmp_ solve.
0 KSP Residual norm 5.050127354211e-04
1 KSP Residual norm 6.080291537133e-18
1 SNES Function norm 2.452276331064e-08
Iteration 1 residual: 2.4522763310640686e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.452276331064e-08
1 KSP Residual norm 1.178775074447e-19
2 SNES Function norm 3.141923850123e-12
Iteration 2 residual: 3.141923850123303e-12
F_reac = -0.005211478044731446
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 261.0 is 0.0019321048639874675
At growth time 261.00, growth rate is 1.0000674194715178
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.052281571613e-04
Iteration 0 residual: 0.0005052281571613425
Residual norms for tmp_ solve.
0 KSP Residual norm 5.052281571613e-04
1 KSP Residual norm 6.198229784910e-18
1 SNES Function norm 2.454386240512e-08
Iteration 1 residual: 2.4543862405124973e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.454386240512e-08
1 KSP Residual norm 1.192374714762e-19
2 SNES Function norm 3.154814359947e-12
Iteration 2 residual: 3.154814359947123e-12
F_reac = -0.0052476880445469515
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 262.0 is 0.001932234934845254
Output written for time 262.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 262.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 262.00, growth rate is 1.0000673859432891
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.049752770519e-04
Iteration 0 residual: 0.0005049752770519258
Residual norms for tmp_ solve.
0 KSP Residual norm 5.049752770519e-04
1 KSP Residual norm 6.046962616747e-18
1 SNES Function norm 2.451942640372e-08
Iteration 1 residual: 2.4519426403720165e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.451942640372e-08
1 KSP Residual norm 1.197556534199e-19
2 SNES Function norm 3.143142081822e-12
Iteration 2 residual: 3.1431420818223533e-12
F_reac = -0.005283881609883278
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 263.0 is 0.0019323649497745947
At growth time 263.00, growth rate is 1.0000673082248321
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.043912812102e-04
Iteration 0 residual: 0.0005043912812102154
Residual norms for tmp_ solve.
0 KSP Residual norm 5.043912812102e-04
1 KSP Residual norm 6.078633562353e-18
1 SNES Function norm 2.446284153871e-08
Iteration 1 residual: 2.4462841538706096e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.446284153871e-08
1 KSP Residual norm 1.181043120664e-19
2 SNES Function norm 3.114272046862e-12
Iteration 2 residual: 3.114272046861791e-12
F_reac = -0.005320035002805824
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 264.0 is 0.0019324948234963324
At growth time 264.00, growth rate is 1.0000671984922307
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.035674090959e-04
Iteration 0 residual: 0.0005035674090958688
Residual norms for tmp_ solve.
0 KSP Residual norm 5.035674090959e-04
1 KSP Residual norm 6.496738625964e-18
1 SNES Function norm 2.438306306101e-08
Iteration 1 residual: 2.4383063061014375e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.438306306101e-08
1 KSP Residual norm 1.247952229680e-19
2 SNES Function norm 3.073530710647e-12
Iteration 2 residual: 3.073530710647453e-12
F_reac = -0.0053561310216442655
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 265.0 is 0.0019326244942041747
At growth time 265.00, growth rate is 1.0000670650203003
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.025656665703e-04
Iteration 0 residual: 0.0005025656665703485
Residual norms for tmp_ solve.
0 KSP Residual norm 5.025656665703e-04
1 KSP Residual norm 6.320650705256e-18
1 SNES Function norm 2.428620452926e-08
Iteration 1 residual: 2.4286204529260247e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.428620452926e-08
1 KSP Residual norm 1.167059197252e-19
2 SNES Function norm 3.024030864969e-12
Iteration 2 residual: 3.0240308649692893e-12
F_reac = -0.005392156906755832
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 266.0 is 0.0019327539160439607
At growth time 266.00, growth rate is 1.0000669135519935
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.014290874138e-04
Iteration 0 residual: 0.0005014290874138489
Residual norms for tmp_ solve.
0 KSP Residual norm 5.014290874138e-04
1 KSP Residual norm 6.232682873861e-18
1 SNES Function norm 2.417652291816e-08
Iteration 1 residual: 2.4176522918161145e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.417652291816e-08
1 KSP Residual norm 1.158693885275e-19
2 SNES Function norm 2.968867425907e-12
Iteration 2 residual: 2.968867425907037e-12
F_reac = -0.0054281029813930135
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 267.0 is 0.0019328830542328077
At growth time 267.00, growth rate is 1.000066748157641
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.001881718861e-04
Iteration 0 residual: 0.0005001881718861169
Residual norms for tmp_ solve.
0 KSP Residual norm 5.001881718861e-04
1 KSP Residual norm 5.982875229846e-18
1 SNES Function norm 2.405704320165e-08
Iteration 1 residual: 2.4057043201651604e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.405704320165e-08
1 KSP Residual norm 1.153070969773e-19
2 SNES Function norm 2.909692066715e-12
Iteration 2 residual: 2.909692066715159e-12
F_reac = -0.005463961753810774
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 268.0 is 0.0019330118818345898
At growth time 268.00, growth rate is 1.0000665717836748
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.988649985239e-04
Iteration 0 residual: 0.0004988649985239041
Residual norms for tmp_ solve.
0 KSP Residual norm 4.988649985239e-04
1 KSP Residual norm 6.079222302975e-18
1 SNES Function norm 2.392996107325e-08
Iteration 1 residual: 2.3929961073248234e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.392996107325e-08
1 KSP Residual norm 1.165730581539e-19
2 SNES Function norm 2.847902667450e-12
Iteration 2 residual: 2.847902667449786e-12
F_reac = -0.0054997273139539
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 269.0 is 0.0019331403775932963
At growth time 269.00, growth rate is 1.0000663866084436
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.974758903584e-04
Iteration 0 residual: 0.0004974758903583896
Residual norms for tmp_ solve.
0 KSP Residual norm 4.974758903584e-04
1 KSP Residual norm 6.197256342877e-18
1 SNES Function norm 2.379690241916e-08
Iteration 1 residual: 2.3796902419163383e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.379690241916e-08
1 KSP Residual norm 1.199774690320e-19
2 SNES Function norm 2.784417241304e-12
Iteration 2 residual: 2.7844172413044286e-12
F_reac = -0.005535394921127853
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 270.0 is 0.001933268524452346
At growth time 270.00, growth rate is 1.0000661942762255
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.960331684668e-04
Iteration 0 residual: 0.0004960331684668129
Residual norms for tmp_ solve.
0 KSP Residual norm 4.960331684668e-04
1 KSP Residual norm 5.918284931160e-18
1 SNES Function norm 2.365909691987e-08
Iteration 1 residual: 2.3659096919870777e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.365909691987e-08
1 KSP Residual norm 1.109500708733e-19
2 SNES Function norm 2.720061133978e-12
Iteration 2 residual: 2.720061133978402e-12
F_reac = -0.005570960717306566
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 271.0 is 0.0019333963085249814
At growth time 271.00, growth rate is 1.0000659960532707
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.945463212392e-04
Iteration 0 residual: 0.0004945463212391765
Residual norms for tmp_ solve.
0 KSP Residual norm 4.945463212392e-04
1 KSP Residual norm 6.272459356754e-18
1 SNES Function norm 2.351749246154e-08
Iteration 1 residual: 2.3517492461539557e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.351749246154e-08
1 KSP Residual norm 1.093340667691e-19
2 SNES Function norm 2.655251091423e-12
Iteration 2 residual: 2.6552510914225533e-12
F_reac = -0.005606421524217614
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 272.0 is 0.001933523718365562
Output written for time 272.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 272.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 272.00, growth rate is 1.0000657929333256
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.930227950969e-04
Iteration 0 residual: 0.0004930227950968775
Residual norms for tmp_ solve.
0 KSP Residual norm 4.930227950969e-04
1 KSP Residual norm 6.274290672530e-18
1 SNES Function norm 2.337283350554e-08
Iteration 1 residual: 2.337283350554054e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.337283350554e-08
1 KSP Residual norm 1.239300876157e-19
2 SNES Function norm 2.590845184200e-12
Iteration 2 residual: 2.5908451841996298e-12
F_reac = -0.005641774697053538
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 273.0 is 0.0019336507444442862
At growth time 273.00, growth rate is 1.0000655857100362
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.914685370354e-04
Iteration 0 residual: 0.0004914685370354328
Residual norms for tmp_ solve.
0 KSP Residual norm 4.914685370354e-04
1 KSP Residual norm 6.234896189808e-18
1 SNES Function norm 2.322571544945e-08
Iteration 1 residual: 2.3225715449445513e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.322571544945e-08
1 KSP Residual norm 1.072823601483e-19
2 SNES Function norm 2.526567874016e-12
Iteration 2 residual: 2.5265678740155987e-12
F_reac = -0.00567701801707441
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 274.0 is 0.0019337773787614797
At growth time 274.00, growth rate is 1.0000653750273854
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.898883725861e-04
Iteration 0 residual: 0.0004898883725861447
Residual norms for tmp_ solve.
0 KSP Residual norm 4.898883725861e-04
1 KSP Residual norm 6.196142054840e-18
1 SNES Function norm 2.307662050715e-08
Iteration 1 residual: 2.3076620507150472e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.307662050715e-08
1 KSP Residual norm 1.011697733526e-19
2 SNES Function norm 2.463096286666e-12
Iteration 2 residual: 2.4630962866662582e-12
F_reac = -0.0057121496112695095
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 275.0 is 0.0019339036145590907
At growth time 275.00, growth rate is 1.0000651614153884
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.882862732645e-04
Iteration 0 residual: 0.0004882862732645124
Residual norms for tmp_ solve.
0 KSP Residual norm 4.882862732645e-04
1 KSP Residual norm 5.751656794127e-18
1 SNES Function norm 2.292594581360e-08
Iteration 1 residual: 2.292594581359701e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.292594581360e-08
1 KSP Residual norm 1.033119952668e-19
2 SNES Function norm 2.400374072392e-12
Iteration 2 residual: 2.4003740723915014e-12
F_reac = -0.005747167891183966
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 276.0 is 0.0019340294461010947
At growth time 276.00, growth rate is 1.000064945315767
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.866655489704e-04
Iteration 0 residual: 0.00048666554897042045
Residual norms for tmp_ solve.
0 KSP Residual norm 4.866655489704e-04
1 KSP Residual norm 5.801911997330e-18
1 SNES Function norm 2.277402139750e-08
Iteration 1 residual: 2.2774021397495813e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.277402139750e-08
1 KSP Residual norm 9.913607367793e-20
2 SNES Function norm 2.338534867747e-12
Iteration 2 residual: 2.338534867747277e-12
F_reac = -0.005782071505542317
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 277.0 is 0.0019341548685032778
At growth time 277.00, growth rate is 1.000064727100723
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.850289886642e-04
Iteration 0 residual: 0.0004850289886642065
Residual norms for tmp_ solve.
0 KSP Residual norm 4.850289886642e-04
1 KSP Residual norm 6.089445072157e-18
1 SNES Function norm 2.262112568859e-08
Iteration 1 residual: 2.262112568859262e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.262112568859e-08
1 KSP Residual norm 1.017907090554e-19
2 SNES Function norm 2.277862505578e-12
Iteration 2 residual: 2.277862505577681e-12
F_reac = -0.005816859302920492
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 278.0 is 0.001934279877599275
At growth time 278.00, growth rate is 1.0000645070868939
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.833789649402e-04
Iteration 0 residual: 0.0004833789649402101
Residual norms for tmp_ solve.
0 KSP Residual norm 4.833789649402e-04
1 KSP Residual norm 5.963785913002e-18
1 SNES Function norm 2.246749363216e-08
Iteration 1 residual: 2.2467493632159965e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.246749363216e-08
1 KSP Residual norm 1.004561660747e-19
2 SNES Function norm 2.218609386629e-12
Iteration 2 residual: 2.2186093866294708e-12
F_reac = -0.005851530301940225
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 279.0 is 0.0019344044698335018
At growth time 279.00, growth rate is 1.000064285545896
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.817175130332e-04
Iteration 0 residual: 0.00048171751303315236
Residual norms for tmp_ solve.
0 KSP Residual norm 4.817175130332e-04
1 KSP Residual norm 5.947891965155e-18
1 SNES Function norm 2.231332693889e-08
Iteration 1 residual: 2.2313326938886756e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.231332693889e-08
1 KSP Residual norm 1.058683742896e-19
2 SNES Function norm 2.160175026973e-12
Iteration 2 residual: 2.1601750269731664e-12
F_reac = -0.0058860836670980125
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 280.0 is 0.0019345286421743888
At growth time 280.00, growth rate is 1.0000640627124135
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.800463914165e-04
Iteration 0 residual: 0.0004800463914164949
Residual norms for tmp_ solve.
0 KSP Residual norm 4.800463914165e-04
1 KSP Residual norm 5.623342425017e-18
1 SNES Function norm 2.215879924231e-08
Iteration 1 residual: 2.2158799242306112e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.215879924231e-08
1 KSP Residual norm 9.725225067428e-20
2 SNES Function norm 2.103254453766e-12
Iteration 2 residual: 2.1032544537662928e-12
F_reac = -0.005920518688946669
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 281.0 is 0.0019346523920432078
At growth time 281.00, growth rate is 1.0000638387904972
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.783671290248e-04
Iteration 0 residual: 0.0004783671290247621
Residual norms for tmp_ solve.
0 KSP Residual norm 4.783671290248e-04
1 KSP Residual norm 6.218416328781e-18
1 SNES Function norm 2.200406007097e-08
Iteration 1 residual: 2.200406007097013e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.200406007097e-08
1 KSP Residual norm 9.296949919194e-20
2 SNES Function norm 2.047362958451e-12
Iteration 2 residual: 2.047362958450873e-12
F_reac = -0.005954834767663804
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 282.0 is 0.0019347757172550732
Output written for time 282.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 282.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 282.00, growth rate is 1.0000636139585384
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.766810625155e-04
Iteration 0 residual: 0.0004766810625154998
Residual norms for tmp_ solve.
0 KSP Residual norm 4.766810625155e-04
1 KSP Residual norm 5.576269378069e-18
1 SNES Function norm 2.184924030988e-08
Iteration 1 residual: 2.1849240309876098e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.184924030988e-08
1 KSP Residual norm 9.686273256558e-20
2 SNES Function norm 1.993263081709e-12
Iteration 2 residual: 1.9932630817089034e-12
F_reac = -0.005989031399263971
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 283.0 is 0.0019348986159694792
At growth time 283.00, growth rate is 1.0000633883732464
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.749893660657e-04
Iteration 0 residual: 0.0004749893660657026
Residual norms for tmp_ solve.
0 KSP Residual norm 4.749893660657e-04
1 KSP Residual norm 6.141082841126e-18
1 SNES Function norm 2.169445369727e-08
Iteration 1 residual: 2.1694453697272474e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.169445369727e-08
1 KSP Residual norm 9.749773662110e-20
2 SNES Function norm 1.940382225222e-12
Iteration 2 residual: 1.9403822252224784e-12
F_reac = -0.006023108163986912
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 284.0 is 0.0019350210866485062
At growth time 284.00, growth rate is 1.0000631621728653
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.732930754917e-04
Iteration 0 residual: 0.00047329307549171673
Residual norms for tmp_ solve.
0 KSP Residual norm 4.732930754917e-04
1 KSP Residual norm 5.946398777049e-18
1 SNES Function norm 2.153980020619e-08
Iteration 1 residual: 2.1539800206192088e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.153980020619e-08
1 KSP Residual norm 9.537749095025e-20
2 SNES Function norm 1.888675334424e-12
Iteration 2 residual: 1.8886753344242853e-12
F_reac = -0.006057064716371261
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 285.0 is 0.001935143128021295
At growth time 285.00, growth rate is 1.0000629354798083
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.715931079682e-04
Iteration 0 residual: 0.00047159310796822894
Residual norms for tmp_ solve.
0 KSP Residual norm 4.715931079682e-04
1 KSP Residual norm 5.926577489070e-18
1 SNES Function norm 2.138536717205e-08
Iteration 1 residual: 2.138536717204786e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.138536717205e-08
1 KSP Residual norm 8.866458959798e-20
2 SNES Function norm 1.838250443038e-12
Iteration 2 residual: 1.838250443037989e-12
F_reac = -0.006090900776763142
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 286.0 is 0.001935264739053479
At growth time 286.00, growth rate is 1.0000627084028282
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.698902783267e-04
Iteration 0 residual: 0.00046989027832666574
Residual norms for tmp_ solve.
0 KSP Residual norm 4.698902783267e-04
1 KSP Residual norm 5.898118525831e-18
1 SNES Function norm 2.123123215392e-08
Iteration 1 residual: 2.1231232153915678e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.123123215392e-08
1 KSP Residual norm 8.821379521734e-20
2 SNES Function norm 1.789165057067e-12
Iteration 2 residual: 1.7891650570667885e-12
F_reac = -0.006124616123990145
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 287.0 is 0.0019353859189209228
At growth time 287.00, growth rate is 1.0000624810388297
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.681853125954e-04
Iteration 0 residual: 0.00046818531259539236
Residual norms for tmp_ solve.
0 KSP Residual norm 4.681853125954e-04
1 KSP Residual norm 5.948625046935e-18
1 SNES Function norm 2.107746334293e-08
Iteration 1 residual: 2.107746334293199e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.107746334293e-08
1 KSP Residual norm 8.994599748188e-20
2 SNES Function norm 1.741569003272e-12
Iteration 2 residual: 1.7415690032722847e-12
F_reac = -0.006158210589000813
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 288.0 is 0.001935506666986838
Output written for time 288.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 288.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9355e-03. Feedback scalar: 0.977
======================================================================
Processing event from t=288 to 289
Stimulus event processed. No growth applied.
======================================================================
Processing event from t=289 to 360
At growth time 289.00, growth rate is 1.000061659207446
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.620262878787e-04
Iteration 0 residual: 0.0004620262878787101
Residual norms for tmp_ solve.
0 KSP Residual norm 4.620262878787e-04
1 KSP Residual norm 5.562820560355e-18
1 SNES Function norm 2.052634752912e-08
Iteration 1 residual: 2.0526347529120716e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.052634752912e-08
1 KSP Residual norm 8.474150068441e-20
2 SNES Function norm 1.577877457361e-12
Iteration 2 residual: 1.5778774573612411e-12
F_reac = -0.006191364517570634
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 290.0 is 0.0019356258342565446
Output written for time 290.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 290.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 290.00, growth rate is 1.0000614775325145
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.606637015559e-04
Iteration 0 residual: 0.0004606637015558869
Residual norms for tmp_ solve.
0 KSP Residual norm 4.606637015559e-04
1 KSP Residual norm 5.490365829008e-18
1 SNES Function norm 2.040550090121e-08
Iteration 1 residual: 2.040550090121414e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.040550090121e-08
1 KSP Residual norm 8.347894707099e-20
2 SNES Function norm 1.544427650446e-12
Iteration 2 residual: 1.5444276504457213e-12
F_reac = -0.006224422076470376
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 291.0 is 0.0019357446577268627
At growth time 291.00, growth rate is 1.0000613601926602
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.597831580232e-04
Iteration 0 residual: 0.0004597831580231684
Residual norms for tmp_ solve.
0 KSP Residual norm 4.597831580232e-04
1 KSP Residual norm 5.619370074625e-18
1 SNES Function norm 2.032763619399e-08
Iteration 1 residual: 2.0327636193991117e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.032763619399e-08
1 KSP Residual norm 8.722160660627e-20
2 SNES Function norm 1.523494191401e-12
Iteration 2 residual: 1.5234941914007802e-12
F_reac = -0.006257417849425824
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 292.0 is 0.0019358632616875938
At growth time 292.00, growth rate is 1.0000613261133402
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.595264509352e-04
Iteration 0 residual: 0.00045952645093519953
Residual norms for tmp_ solve.
0 KSP Residual norm 4.595264509352e-04
1 KSP Residual norm 5.430420344511e-18
1 SNES Function norm 2.030504454649e-08
Iteration 1 residual: 2.0305044546491536e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.030504454649e-08
1 KSP Residual norm 8.200565543084e-20
2 SNES Function norm 1.518069028404e-12
Iteration 2 residual: 1.5180690284036152e-12
F_reac = -0.0062903966027992335
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 293.0 is 0.0019359818070427367
At growth time 293.00, growth rate is 1.0000613888363543
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.599950345466e-04
Iteration 0 residual: 0.0004599950345465671
Residual norms for tmp_ solve.
0 KSP Residual norm 4.599950345466e-04
1 KSP Residual norm 6.023761792356e-18
1 SNES Function norm 2.034661320637e-08
Iteration 1 residual: 2.034661320637369e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.034661320637e-08
1 KSP Residual norm 8.482857104928e-20
2 SNES Function norm 1.530181096488e-12
Iteration 2 residual: 1.5301810964878504e-12
F_reac = -0.006323410392514665
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 294.0 is 0.0019361004809141157
At growth time 294.00, growth rate is 1.0000615577043654
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.612588991792e-04
Iteration 0 residual: 0.00046125889917921306
Residual norms for tmp_ solve.
0 KSP Residual norm 4.612588991792e-04
1 KSP Residual norm 5.502836210844e-18
1 SNES Function norm 2.045875266369e-08
Iteration 1 residual: 2.045875266368913e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.045875266369e-08
1 KSP Residual norm 8.339582301125e-20
2 SNES Function norm 1.562342999932e-12
Iteration 2 residual: 1.5623429999320342e-12
F_reac = -0.006356516307199177
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 295.0 is 0.001936219488531314
At growth time 295.00, growth rate is 1.0000618381981912
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.633590987039e-04
Iteration 0 residual: 0.0004633590987038607
Residual norms for tmp_ solve.
0 KSP Residual norm 4.633590987039e-04
1 KSP Residual norm 5.507452494693e-18
1 SNES Function norm 2.064570748633e-08
Iteration 1 residual: 2.0645707486325725e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.064570748633e-08
1 KSP Residual norm 8.955093193165e-20
2 SNES Function norm 1.616845132258e-12
Iteration 2 residual: 1.6168451322578022e-12
F_reac = -0.00638977439223393
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 296.0 is 0.0019363390457709806
At growth time 296.00, growth rate is 1.0000622316520202
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.663056172603e-04
Iteration 0 residual: 0.000466305617260264
Residual norms for tmp_ solve.
0 KSP Residual norm 4.663056172603e-04
1 KSP Residual norm 5.624212327787e-18
1 SNES Function norm 2.090939366810e-08
Iteration 1 residual: 2.0909393668096683e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.090939366810e-08
1 KSP Residual norm 9.284301190649e-20
2 SNES Function norm 1.696316429129e-12
Iteration 2 residual: 1.6963164291292747e-12
F_reac = -0.006423245420184939
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 297.0 is 0.0019364593711429308
At growth time 297.00, growth rate is 1.0000627344544761
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.700713839260e-04
Iteration 0 residual: 0.0004700713839259762
Residual norms for tmp_ solve.
0 KSP Residual norm 4.700713839260e-04
1 KSP Residual norm 5.594209609112e-18
1 SNES Function norm 2.124881074358e-08
Iteration 1 residual: 2.124881074357591e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.124881074358e-08
1 KSP Residual norm 9.328852244377e-20
2 SNES Function norm 1.803627063317e-12
Iteration 2 residual: 1.8036270633168188e-12
F_reac = -0.006456988231023761
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 298.0 is 0.001936580676228753
At growth time 298.00, growth rate is 1.0000633367795673
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.745827655497e-04
Iteration 0 residual: 0.00047458276554974705
Residual norms for tmp_ solve.
0 KSP Residual norm 4.745827655497e-04
1 KSP Residual norm 5.839792284603e-18
1 SNES Function norm 2.165902523420e-08
Iteration 1 residual: 2.1659025234201533e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.165902523420e-08
1 KSP Residual norm 1.023805977444e-19
2 SNES Function norm 1.941451728444e-12
Iteration 2 residual: 1.9414517284440995e-12
F_reac = -0.0064910563891656045
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 299.0 is 0.0019367031536630108
At growth time 299.00, growth rate is 1.000064020858409
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.797066193892e-04
Iteration 0 residual: 0.0004797066193891683
Residual norms for tmp_ solve.
0 KSP Residual norm 4.797066193892e-04
1 KSP Residual norm 5.882750799863e-18
1 SNES Function norm 2.212969810058e-08
Iteration 1 residual: 2.2129698100580084e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.212969810058e-08
1 KSP Residual norm 9.927596194131e-20
2 SNES Function norm 2.110837095584e-12
Iteration 2 residual: 2.110837095584351e-12
F_reac = -0.006525493910051048
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 300.0 is 0.0019368269617678067
Output written for time 300.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 300.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 300.00, growth rate is 1.0000647518948615
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.851822329043e-04
Iteration 0 residual: 0.00048518223290430757
Residual norms for tmp_ solve.
0 KSP Residual norm 4.851822329043e-04
1 KSP Residual norm 5.734341315184e-18
1 SNES Function norm 2.263830067143e-08
Iteration 1 residual: 2.2638300671428555e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.263830067143e-08
1 KSP Residual norm 1.004121272309e-19
2 SNES Function norm 2.309553354012e-12
Iteration 2 residual: 2.3095533540118707e-12
F_reac = -0.006560326098976615
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 301.0 is 0.0019369521916123627
At growth time 301.00, growth rate is 1.0000657064073197
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.923321087747e-04
Iteration 0 residual: 0.00049233210877474
Residual norms for tmp_ solve.
0 KSP Residual norm 4.923321087747e-04
1 KSP Residual norm 6.034775895695e-18
1 SNES Function norm 2.331113283257e-08
Iteration 1 residual: 2.3311132832566897e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.331113283257e-08
1 KSP Residual norm 1.179370332924e-19
2 SNES Function norm 2.598642376818e-12
Iteration 2 residual: 2.5986423768182133e-12
F_reac = -0.006595673223897318
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.23 seconds.
CSA at time 302.0 is 0.0019370792756999752
At growth time 302.00, growth rate is 1.0000678008137325
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.080221346258e-04
Iteration 0 residual: 0.0005080221346257948
Residual norms for tmp_ solve.
0 KSP Residual norm 5.080221346258e-04
1 KSP Residual norm 6.329995050218e-18
1 SNES Function norm 2.482225241000e-08
Iteration 1 residual: 2.482225241000405e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.482225241000e-08
1 KSP Residual norm 1.282021381390e-19
2 SNES Function norm 3.376433868974e-12
Iteration 2 residual: 3.3764338689738776e-12
F_reac = -0.006632148580738105
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 303.0 is 0.0019372104192295068
At growth time 303.00, growth rate is 1.0000696617816547
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.219629773778e-04
Iteration 0 residual: 0.0005219629773778122
Residual norms for tmp_ solve.
0 KSP Residual norm 5.219629773778e-04
1 KSP Residual norm 6.292264920924e-18
1 SNES Function norm 2.620511753099e-08
Iteration 1 residual: 2.6205117530994575e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.620511753099e-08
1 KSP Residual norm 1.426557971521e-19
2 SNES Function norm 4.282537213468e-12
Iteration 2 residual: 4.2825372134681625e-12
F_reac = -0.006669626726874041
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 304.0 is 0.0019373451714578896
At growth time 304.00, growth rate is 1.0000709459061874
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.315818957312e-04
Iteration 0 residual: 0.0005315818957311583
Residual norms for tmp_ solve.
0 KSP Residual norm 5.315818957312e-04
1 KSP Residual norm 6.256310144774e-18
1 SNES Function norm 2.718144813053e-08
Iteration 1 residual: 2.718144813053338e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.718144813053e-08
1 KSP Residual norm 1.577879091453e-19
2 SNES Function norm 5.064408427848e-12
Iteration 2 residual: 5.064408427847673e-12
F_reac = -0.00670779744314173
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.20 seconds.
CSA at time 305.0 is 0.0019374824172197509
At growth time 305.00, growth rate is 1.0000717095133949
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.373009873335e-04
Iteration 0 residual: 0.000537300987333465
Residual norms for tmp_ solve.
0 KSP Residual norm 5.373009873335e-04
1 KSP Residual norm 6.352171106549e-18
1 SNES Function norm 2.777061049646e-08
Iteration 1 residual: 2.777061049646489e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.777061049646e-08
1 KSP Residual norm 1.621315224039e-19
2 SNES Function norm 5.605045624191e-12
Iteration 2 residual: 5.605045624191314e-12
F_reac = -0.006746380762777901
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 306.0 is 0.0019376211500220497
At growth time 306.00, growth rate is 1.0000721433246311
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.405492015463e-04
Iteration 0 residual: 0.0005405492015462685
Residual norms for tmp_ solve.
0 KSP Residual norm 5.405492015463e-04
1 KSP Residual norm 6.663373597807e-18
1 SNES Function norm 2.810817543431e-08
Iteration 1 residual: 2.810817543431281e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.810817543431e-08
1 KSP Residual norm 1.604841352424e-19
2 SNES Function norm 5.942653793227e-12
Iteration 2 residual: 5.942653793227364e-12
F_reac = -0.006785199289801283
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 307.0 is 0.0019377607320964687
At growth time 307.00, growth rate is 1.000072370812096
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.422516225257e-04
Iteration 0 residual: 0.000542251622525683
Residual norms for tmp_ solve.
0 KSP Residual norm 5.422516225257e-04
1 KSP Residual norm 6.621029066625e-18
1 SNES Function norm 2.828601845883e-08
Iteration 1 residual: 2.8286018458831307e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.828601845883e-08
1 KSP Residual norm 1.637038429471e-19
2 SNES Function norm 6.129997932049e-12
Iteration 2 residual: 6.129997932049202e-12
F_reac = -0.0068241420353263695
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 308.0 is 0.0019379007644032844
At growth time 308.00, growth rate is 1.0000724642326655
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.429496136735e-04
Iteration 0 residual: 0.0005429496136734814
Residual norms for tmp_ solve.
0 KSP Residual norm 5.429496136735e-04
1 KSP Residual norm 6.434568838908e-18
1 SNES Function norm 2.835921333260e-08
Iteration 1 residual: 2.8359213332598556e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.835921333260e-08
1 KSP Residual norm 1.676534581883e-19
2 SNES Function norm 6.211235440847e-12
Iteration 2 residual: 6.211235440846675e-12
F_reac = -0.006863136872696424
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 309.0 is 0.0019380409876100762
At growth time 309.00, growth rate is 1.0000724677872221
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.429743357613e-04
Iteration 0 residual: 0.0005429743357612796
Residual norms for tmp_ solve.
0 KSP Residual norm 5.429743357613e-04
1 KSP Residual norm 6.707723699735e-18
1 SNES Function norm 2.836199320416e-08
Iteration 1 residual: 2.8361993204159505e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.836199320416e-08
1 KSP Residual norm 1.799146323483e-19
2 SNES Function norm 6.217597536119e-12
Iteration 2 residual: 6.21759753611851e-12
F_reac = -0.00690213544823996
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 310.0 is 0.0019381812278474325
Output written for time 310.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 310.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 310.00, growth rate is 1.0000724094338298
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.425352548578e-04
Iteration 0 residual: 0.0005425352548578095
Residual norms for tmp_ solve.
0 KSP Residual norm 5.425352548578e-04
1 KSP Residual norm 6.835450998912e-18
1 SNES Function norm 2.831624814401e-08
Iteration 1 residual: 2.8316248144012327e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.831624814401e-08
1 KSP Residual norm 1.709820460663e-19
2 SNES Function norm 6.172366349071e-12
Iteration 2 residual: 6.172366349071443e-12
F_reac = -0.006941104445427693
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 311.0 is 0.0019383213653041875
At growth time 311.00, growth rate is 1.000072307338526
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.417684733563e-04
Iteration 0 residual: 0.0005417684733562601
Residual norms for tmp_ solve.
0 KSP Residual norm 5.417684733563e-04
1 KSP Residual norm 6.562537763974e-18
1 SNES Function norm 2.823630834017e-08
Iteration 1 residual: 2.8236308340171176e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.823630834017e-08
1 KSP Residual norm 1.629258395836e-19
2 SNES Function norm 6.091361089200e-12
Iteration 2 residual: 6.091361089200008e-12
F_reac = -0.006980020318354422
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.20 seconds.
CSA at time 312.0 is 0.0019384613152946047
At growth time 312.00, growth rate is 1.000072173583021
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.407645088945e-04
Iteration 0 residual: 0.0005407645088944874
Residual norms for tmp_ solve.
0 KSP Residual norm 5.407645088945e-04
1 KSP Residual norm 7.231968340722e-18
1 SNES Function norm 2.813175508003e-08
Iteration 1 residual: 2.8131755080033858e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.813175508003e-08
1 KSP Residual norm 1.591330414054e-19
2 SNES Function norm 5.986236958883e-12
Iteration 2 residual: 5.986236958882597e-12
F_reac = -0.007018866019336425
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 313.0 is 0.0019386010164942193
At growth time 313.00, growth rate is 1.0000720163778754
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.395848759111e-04
Iteration 0 residual: 0.0005395848759111149
Residual norms for tmp_ solve.
0 KSP Residual norm 5.395848759111e-04
1 KSP Residual norm 6.714020292464e-18
1 SNES Function norm 2.800912487789e-08
Iteration 1 residual: 2.8009124877891227e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.800912487789e-08
1 KSP Residual norm 1.628996179397e-19
2 SNES Function norm 5.865107742476e-12
Iteration 2 residual: 5.865107742475716e-12
F_reac = -0.007057628916814668
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 314.0 is 0.0019387404234546804
At growth time 314.00, growth rate is 1.00007184142134
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.382722662923e-04
Iteration 0 residual: 0.0005382722662922878
Residual norms for tmp_ solve.
0 KSP Residual norm 5.382722662923e-04
1 KSP Residual norm 6.675405380719e-18
1 SNES Function norm 2.787296877190e-08
Iteration 1 residual: 2.7872968771895408e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.787296877190e-08
1 KSP Residual norm 1.635322731298e-19
2 SNES Function norm 5.732837939892e-12
Iteration 2 residual: 5.732837939892397e-12
F_reac = -0.00709629944409789
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 315.0 is 0.0019388795017459468
At growth time 315.00, growth rate is 1.0000716527519637
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.368569372545e-04
Iteration 0 residual: 0.0005368569372544699
Residual norms for tmp_ solve.
0 KSP Residual norm 5.368569372545e-04
1 KSP Residual norm 6.471174611944e-18
1 SNES Function norm 2.772651947498e-08
Iteration 1 residual: 2.772651947498283e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.772651947498e-08
1 KSP Residual norm 1.651959773461e-19
2 SNES Function norm 5.593866718194e-12
Iteration 2 residual: 5.593866718193547e-12
F_reac = -0.007134870206673141
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 316.0 is 0.0019390182247470834
At growth time 316.00, growth rate is 1.000071453293078
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.353607906704e-04
Iteration 0 residual: 0.0005353607906703933
Residual norms for tmp_ solve.
0 KSP Residual norm 5.353607906704e-04
1 KSP Residual norm 6.419081214567e-18
1 SNES Function norm 2.757212168010e-08
Iteration 1 residual: 2.757212168010335e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.757212168010e-08
1 KSP Residual norm 1.545386597421e-19
2 SNES Function norm 5.450892683229e-12
Iteration 2 residual: 5.450892683229469e-12
F_reac = -0.007173335382373546
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 317.0 is 0.0019391565714897848
At growth time 317.00, growth rate is 1.000071245205864
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.338000183042e-04
Iteration 0 residual: 0.0005338000183041645
Residual norms for tmp_ solve.
0 KSP Residual norm 5.338000183042e-04
1 KSP Residual norm 6.483516083771e-18
1 SNES Function norm 2.741151197757e-08
Iteration 1 residual: 2.7411511977573182e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.741151197757e-08
1 KSP Residual norm 1.622142215957e-19
2 SNES Function norm 5.305683583178e-12
Iteration 2 residual: 5.305683583177611e-12
F_reac = -0.007211690311464413
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 318.0 is 0.0019392945251847876
At growth time 318.00, growth rate is 1.000071030121556
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.321868415028e-04
Iteration 0 residual: 0.0005321868415027747
Residual norms for tmp_ solve.
0 KSP Residual norm 5.321868415028e-04
1 KSP Residual norm 6.654806316301e-18
1 SNES Function norm 2.724600213894e-08
Iteration 1 residual: 2.7246002138936543e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.724600213894e-08
1 KSP Residual norm 1.492969880701e-19
2 SNES Function norm 5.160256905661e-12
Iteration 2 residual: 5.160256905660851e-12
F_reac = -0.007249931211595405
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 319.0 is 0.0019394320721970654
At growth time 319.00, growth rate is 1.0000708092962778
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.305306712276e-04
Iteration 0 residual: 0.0005305306712275796
Residual norms for tmp_ solve.
0 KSP Residual norm 5.305306712276e-04
1 KSP Residual norm 6.775880318587e-18
1 SNES Function norm 2.707660354311e-08
Iteration 1 residual: 2.7076603543112626e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.707660354311e-08
1 KSP Residual norm 1.439955612153e-19
2 SNES Function norm 5.015629291433e-12
Iteration 2 residual: 5.015629291432716e-12
F_reac = -0.007288054976054328
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 320.0 is 0.0019395692013206138
Output written for time 320.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 320.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 320.00, growth rate is 1.0000705837157509
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.288388925630e-04
Iteration 0 residual: 0.0005288388925630397
Residual norms for tmp_ solve.
0 KSP Residual norm 5.288388925630e-04
1 KSP Residual norm 6.461544318646e-18
1 SNES Function norm 2.690411096943e-08
Iteration 1 residual: 2.6904110969429194e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.690411096943e-08
1 KSP Residual norm 1.453395497772e-19
2 SNES Function norm 4.872155332603e-12
Iteration 2 residual: 4.87215533260345e-12
F_reac = -0.007326059028342877
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 321.0 is 0.0019397059032556065
At growth time 321.00, growth rate is 1.0000703541671385
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.271174029630e-04
Iteration 0 residual: 0.0005271174029630085
Residual norms for tmp_ solve.
0 KSP Residual norm 5.271174029630e-04
1 KSP Residual norm 6.289406681252e-18
1 SNES Function norm 2.672915704689e-08
Iteration 1 residual: 2.6729157046889723e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.672915704689e-08
1 KSP Residual norm 1.516797058187e-19
2 SNES Function norm 4.731302332815e-12
Iteration 2 residual: 4.7313023328150675e-12
F_reac = -0.007363941215387476
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 322.0 is 0.001939842170224549
At growth time 322.00, growth rate is 1.0000701212890937
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.253709872176e-04
Iteration 0 residual: 0.0005253709872176251
Residual norms for tmp_ solve.
0 KSP Residual norm 5.253709872176e-04
1 KSP Residual norm 6.423593062259e-18
1 SNES Function norm 2.655225665749e-08
Iteration 1 residual: 2.6552256657491634e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.655225665749e-08
1 KSP Residual norm 1.449224349580e-19
2 SNES Function norm 4.592668186559e-12
Iteration 2 residual: 4.592668186558523e-12
F_reac = -0.007401699727669989
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.20 seconds.
CSA at time 323.0 is 0.001939977995685128
At growth time 323.00, growth rate is 1.0000698856071781
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.236035828244e-04
Iteration 0 residual: 0.0005236035828244429
Residual norms for tmp_ solve.
0 KSP Residual norm 5.236035828244e-04
1 KSP Residual norm 6.789242780905e-18
1 SNES Function norm 2.637383208778e-08
Iteration 1 residual: 2.6373832087777122e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.637383208778e-08
1 KSP Residual norm 1.396339345960e-19
2 SNES Function norm 4.456951243280e-12
Iteration 2 residual: 4.456951243280171e-12
F_reac = -0.00743933303840652
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.20 seconds.
CSA at time 324.0 is 0.0019401133741116074
At growth time 324.00, growth rate is 1.0000696475593387
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.218184708417e-04
Iteration 0 residual: 0.0005218184708417125
Residual norms for tmp_ solve.
0 KSP Residual norm 5.218184708417e-04
1 KSP Residual norm 6.371474525698e-18
1 SNES Function norm 2.619423439964e-08
Iteration 1 residual: 2.6194234399641478e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.619423439964e-08
1 KSP Residual norm 1.325498989668e-19
2 SNES Function norm 4.324182886369e-12
Iteration 2 residual: 4.324182886369274e-12
F_reac = -0.007476839856439468
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 325.0 is 0.001940248300825461
At growth time 325.00, growth rate is 1.000069407514537
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.200184154872e-04
Iteration 0 residual: 0.0005200184154872245
Residual norms for tmp_ solve.
0 KSP Residual norm 5.200184154872e-04
1 KSP Residual norm 6.646833316691e-18
1 SNES Function norm 2.601375849456e-08
Iteration 1 residual: 2.6013758494560194e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.601375849456e-08
1 KSP Residual norm 1.422918310635e-19
2 SNES Function norm 4.195279061584e-12
Iteration 2 residual: 4.19527906158395e-12
F_reac = -0.007514219089135171
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 326.0 is 0.0019403827718620403
At growth time 326.00, growth rate is 1.0000691657865963
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.182057678670e-04
Iteration 0 residual: 0.000518205767866976
Residual norms for tmp_ solve.
0 KSP Residual norm 5.182057678670e-04
1 KSP Residual norm 6.195026044115e-18
1 SNES Function norm 2.583265511893e-08
Iteration 1 residual: 2.5832655118925166e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.583265511893e-08
1 KSP Residual norm 1.351001946667e-19
2 SNES Function norm 4.068963352813e-12
Iteration 2 residual: 4.0689633528129226e-12
F_reac = -0.007551469812736126
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 327.0 is 0.0019405167838639642
At growth time 327.00, growth rate is 1.0000689226446646
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.163825443720e-04
Iteration 0 residual: 0.0005163825443720377
Residual norms for tmp_ solve.
0 KSP Residual norm 5.163825443720e-04
1 KSP Residual norm 6.351750794913e-18
1 SNES Function norm 2.565113700313e-08
Iteration 1 residual: 2.5651137003132695e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.565113700313e-08
1 KSP Residual norm 1.298375418678e-19
2 SNES Function norm 3.946571123123e-12
Iteration 2 residual: 3.9465711231227924e-12
F_reac = -0.007588591248345649
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 328.0 is 0.0019406503339948178
At growth time 328.00, growth rate is 1.0000686783212405
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.145504868012e-04
Iteration 0 residual: 0.0005145504868012236
Residual norms for tmp_ solve.
0 KSP Residual norm 5.145504868012e-04
1 KSP Residual norm 6.122795644353e-18
1 SNES Function norm 2.546938860561e-08
Iteration 1 residual: 2.5469388605607027e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.546938860561e-08
1 KSP Residual norm 1.364963109111e-19
2 SNES Function norm 3.827684997171e-12
Iteration 2 residual: 3.827684997170642e-12
F_reac = -0.007625582742208741
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 329.0 is 0.0019407834198682916
At growth time 329.00, growth rate is 1.0000684330184244
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.127111092093e-04
Iteration 0 residual: 0.0005127111092093251
Residual norms for tmp_ solve.
0 KSP Residual norm 5.127111092093e-04
1 KSP Residual norm 6.569038994433e-18
1 SNES Function norm 2.528756776157e-08
Iteration 1 residual: 2.5287567761568268e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.528756776157e-08
1 KSP Residual norm 1.286933245010e-19
2 SNES Function norm 3.712018230492e-12
Iteration 2 residual: 3.712018230492124e-12
F_reac = -0.007662443749380102
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 330.0 is 0.0019409160394894345
Output written for time 330.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 330.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 330.00, growth rate is 1.0000681869128547
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.108657348776e-04
Iteration 0 residual: 0.0005108657348776444
Residual norms for tmp_ solve.
0 KSP Residual norm 5.108657348776e-04
1 KSP Residual norm 6.447628045044e-18
1 SNES Function norm 2.510581313175e-08
Iteration 1 residual: 2.510581313174781e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.510581313175e-08
1 KSP Residual norm 1.261800506410e-19
2 SNES Function norm 3.599943955074e-12
Iteration 2 residual: 3.5999439550744194e-12
F_reac = -0.007699173820023631
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 331.0 is 0.001941048191205449
At growth time 331.00, growth rate is 1.000067940159653
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.090155258832e-04
Iteration 0 residual: 0.000509015525883184
Residual norms for tmp_ solve.
0 KSP Residual norm 5.090155258832e-04
1 KSP Residual norm 6.488838196876e-18
1 SNES Function norm 2.492424447151e-08
Iteration 1 residual: 2.4924244471508047e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.492424447151e-08
1 KSP Residual norm 1.330031657369e-19
2 SNES Function norm 3.491141323314e-12
Iteration 2 residual: 3.491141323313707e-12
F_reac = -0.007735772587855585
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 332.0 is 0.0019411798736641052
At growth time 332.00, growth rate is 1.0000676928956194
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.071615070267e-04
Iteration 0 residual: 0.000507161507026742
Residual norms for tmp_ solve.
0 KSP Residual norm 5.071615070267e-04
1 KSP Residual norm 6.234606915335e-18
1 SNES Function norm 2.474296664461e-08
Iteration 1 residual: 2.4742966644605117e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.474296664461e-08
1 KSP Residual norm 1.427705993908e-19
2 SNES Function norm 3.385947185247e-12
Iteration 2 residual: 3.3859471852465966e-12
F_reac = -0.007772239760278092
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 333.0 is 0.001941311085778337
At growth time 333.00, growth rate is 1.0000674452418423
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.053045854061e-04
Iteration 0 residual: 0.0005053045854060815
Residual norms for tmp_ solve.
0 KSP Residual norm 5.053045854061e-04
1 KSP Residual norm 6.367699707237e-18
1 SNES Function norm 2.456207209255e-08
Iteration 1 residual: 2.456207209255055e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.456207209255e-08
1 KSP Residual norm 1.196978989581e-19
2 SNES Function norm 3.283791671308e-12
Iteration 2 residual: 3.2837916713083424e-12
F_reac = -0.007808575109947184
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 334.0 is 0.0019414418266959033
At growth time 334.00, growth rate is 1.0000671973058572
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.034455665633e-04
Iteration 0 residual: 0.000503445566563277
Residual norms for tmp_ solve.
0 KSP Residual norm 5.034455665633e-04
1 KSP Residual norm 6.020877949546e-18
1 SNES Function norm 2.438164202411e-08
Iteration 1 residual: 2.438164202411367e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.438164202411e-08
1 KSP Residual norm 1.203470447645e-19
2 SNES Function norm 3.184840554795e-12
Iteration 2 residual: 3.184840554795267e-12
F_reac = -0.007844778467471373
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 335.0 is 0.0019415720957731385
At growth time 335.00, growth rate is 1.0000669491834413
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 5.015851679508e-04
Iteration 0 residual: 0.0005015851679508179
Residual norms for tmp_ solve.
0 KSP Residual norm 5.015851679508e-04
1 KSP Residual norm 6.166009613795e-18
1 SNES Function norm 2.420174698957e-08
Iteration 1 residual: 2.4201746989567558e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.420174698957e-08
1 KSP Residual norm 1.182999559619e-19
2 SNES Function norm 3.089356611592e-12
Iteration 2 residual: 3.0893566115916217e-12
F_reac = -0.007880849715101777
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 336.0 is 0.0019417018925522787
At growth time 336.00, growth rate is 1.0000667009601236
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.997240302361e-04
Iteration 0 residual: 0.000499724030236113
Residual norms for tmp_ solve.
0 KSP Residual norm 4.997240302361e-04
1 KSP Residual norm 6.890070464679e-18
1 SNES Function norm 2.402245113416e-08
Iteration 1 residual: 2.4022451134162157e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.402245113416e-08
1 KSP Residual norm 1.123030766502e-19
2 SNES Function norm 2.996656298834e-12
Iteration 2 residual: 2.996656298833584e-12
F_reac = -0.00791678878121214
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 337.0 is 0.001941831216741608
At growth time 337.00, growth rate is 1.0000664527124594
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.978627268578e-04
Iteration 0 residual: 0.0004978627268578262
Residual norms for tmp_ solve.
0 KSP Residual norm 4.978627268578e-04
1 KSP Residual norm 6.093768507173e-18
1 SNES Function norm 2.384380880045e-08
Iteration 1 residual: 2.3843808800451823e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.384380880045e-08
1 KSP Residual norm 1.274949862562e-19
2 SNES Function norm 2.906945071965e-12
Iteration 2 residual: 2.9069450719654413e-12
F_reac = -0.00795259563548685
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 338.0 is 0.0019419600681981832
At growth time 338.00, growth rate is 1.0000662045091164
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.960017721613e-04
Iteration 0 residual: 0.0004960017721613456
Residual norms for tmp_ solve.
0 KSP Residual norm 4.960017721613e-04
1 KSP Residual norm 5.877859303041e-18
1 SNES Function norm 2.366587001502e-08
Iteration 1 residual: 2.3665870015018453e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.366587001502e-08
1 KSP Residual norm 1.133587525152e-19
2 SNES Function norm 2.819830169707e-12
Iteration 2 residual: 2.8198301697073226e-12
F_reac = -0.007988270284657933
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 339.0 is 0.0019420884469125315
At growth time 339.00, growth rate is 1.0000659564118046
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.941416283527e-04
Iteration 0 residual: 0.000494141628352657
Residual norms for tmp_ solve.
0 KSP Residual norm 4.941416283527e-04
1 KSP Residual norm 6.536945258921e-18
1 SNES Function norm 2.348867776414e-08
Iteration 1 residual: 2.3488677764137422e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.348867776414e-08
1 KSP Residual norm 1.087779246489e-19
2 SNES Function norm 2.736130281619e-12
Iteration 2 residual: 2.7361302816193567e-12
F_reac = -0.008023812768787435
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 340.0 is 0.0019422163529952217
Output written for time 340.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 340.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 340.00, growth rate is 1.000065708476076
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.922827115073e-04
Iteration 0 residual: 0.0004922827115073263
Residual norms for tmp_ solve.
0 KSP Residual norm 4.922827115073e-04
1 KSP Residual norm 5.952545331395e-18
1 SNES Function norm 2.331227051974e-08
Iteration 1 residual: 2.3312270519736006e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.331227051974e-08
1 KSP Residual norm 1.110525197439e-19
2 SNES Function norm 2.654814639367e-12
Iteration 2 residual: 2.6548146393668335e-12
F_reac = -0.008059223157939017
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 341.0 is 0.0019423437866649383
At growth time 341.00, growth rate is 1.0000654607520167
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.904253967557e-04
Iteration 0 residual: 0.0004904253967557037
Residual norms for tmp_ solve.
0 KSP Residual norm 4.904253967557e-04
1 KSP Residual norm 5.981654788318e-18
1 SNES Function norm 2.313668234869e-08
Iteration 1 residual: 2.3136682348692334e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.313668234869e-08
1 KSP Residual norm 1.077179381516e-19
2 SNES Function norm 2.576230919014e-12
Iteration 2 residual: 2.576230919013535e-12
F_reac = -0.008094501549249894
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 342.0 is 0.0019424707482379791
At growth time 342.00, growth rate is 1.0000652132848489
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.885700227767e-04
Iteration 0 residual: 0.0004885700227767218
Residual norms for tmp_ solve.
0 KSP Residual norm 4.885700227767e-04
1 KSP Residual norm 6.061812112293e-18
1 SNES Function norm 2.296194303307e-08
Iteration 1 residual: 2.2961943033070197e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.296194303307e-08
1 KSP Residual norm 1.188814702924e-19
2 SNES Function norm 2.500140865390e-12
Iteration 2 residual: 2.5001408653904655e-12
F_reac = -0.00812964806430435
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 343.0 is 0.0019425972381187692
At growth time 343.00, growth rate is 1.0000649661154537
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.867168957327e-04
Iteration 0 residual: 0.0004867168957327419
Residual norms for tmp_ solve.
0 KSP Residual norm 4.867168957327e-04
1 KSP Residual norm 6.130085547821e-18
1 SNES Function norm 2.278807923039e-08
Iteration 1 residual: 2.2788079230385137e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.278807923039e-08
1 KSP Residual norm 1.054421027155e-19
2 SNES Function norm 2.426568389500e-12
Iteration 2 residual: 2.426568389499864e-12
F_reac = -0.008164662846810337
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 344.0 is 0.0019427232567915053
At growth time 344.00, growth rate is 1.0000647192808327
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.848662927144e-04
Iteration 0 residual: 0.0004848662927143549
Residual norms for tmp_ solve.
0 KSP Residual norm 4.848662927144e-04
1 KSP Residual norm 6.517374863473e-18
1 SNES Function norm 2.261511414685e-08
Iteration 1 residual: 2.261511414684523e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.261511414685e-08
1 KSP Residual norm 1.144896819081e-19
2 SNES Function norm 2.355330000135e-12
Iteration 2 residual: 2.35533000013522e-12
F_reac = -0.008199546060500678
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 345.0 is 0.0019428488048127042
At growth time 345.00, growth rate is 1.0000644728145096
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.830184647613e-04
Iteration 0 residual: 0.00048301846476127297
Residual norms for tmp_ solve.
0 KSP Residual norm 4.830184647613e-04
1 KSP Residual norm 5.910682349162e-18
1 SNES Function norm 2.244306807782e-08
Iteration 1 residual: 2.244306807782367e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.244306807782e-08
1 KSP Residual norm 1.075600909964e-19
2 SNES Function norm 2.286591576550e-12
Iteration 2 residual: 2.2865915765495677e-12
F_reac = -0.008234297887278473
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 346.0 is 0.0019429738828043745
At growth time 346.00, growth rate is 1.0000642267468867
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.811736395244e-04
Iteration 0 residual: 0.00048117363952437323
Residual norms for tmp_ solve.
0 KSP Residual norm 4.811736395244e-04
1 KSP Residual norm 5.919952272039e-18
1 SNES Function norm 2.227195951061e-08
Iteration 1 residual: 2.2271959510614813e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.227195951061e-08
1 KSP Residual norm 9.870702164925e-20
2 SNES Function norm 2.219848820013e-12
Iteration 2 residual: 2.2198488200125636e-12
F_reac = -0.008268918525518395
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 347.0 is 0.0019430984914480698
At growth time 347.00, growth rate is 1.0000639811055594
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.793320236240e-04
Iteration 0 residual: 0.0004793320236240312
Residual norms for tmp_ solve.
0 KSP Residual norm 4.793320236240e-04
1 KSP Residual norm 6.143783623432e-18
1 SNES Function norm 2.210180371486e-08
Iteration 1 residual: 2.2101803714861574e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.210180371486e-08
1 KSP Residual norm 1.004866094332e-19
2 SNES Function norm 2.155332936399e-12
Iteration 2 residual: 2.1553329363991817e-12
F_reac = -0.00830340818857466
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 348.0 is 0.001943222631479417
At growth time 348.00, growth rate is 1.000063735915595
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.774938047450e-04
Iteration 0 residual: 0.0004774938047450378
Residual norms for tmp_ solve.
0 KSP Residual norm 4.774938047450e-04
1 KSP Residual norm 6.163827583107e-18
1 SNES Function norm 2.193261445249e-08
Iteration 1 residual: 2.1932614452489528e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.193261445249e-08
1 KSP Residual norm 1.115187284198e-19
2 SNES Function norm 2.093008418152e-12
Iteration 2 residual: 2.0930084181524483e-12
F_reac = -0.008337767103409797
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 349.0 is 0.00194334630368322
At growth time 349.00, growth rate is 1.0000634911997799
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.756591534773e-04
Iteration 0 residual: 0.00047565915347732413
Residual norms for tmp_ solve.
0 KSP Residual norm 4.756591534773e-04
1 KSP Residual norm 5.973512161766e-18
1 SNES Function norm 2.176440386534e-08
Iteration 1 residual: 2.1764403865342155e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.176440386534e-08
1 KSP Residual norm 9.645968282607e-20
2 SNES Function norm 2.032736399037e-12
Iteration 2 residual: 2.0327363990372135e-12
F_reac = -0.008371995509369306
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 350.0 is 0.0019434695088890782
Output written for time 350.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 350.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
At growth time 350.00, growth rate is 1.0000632469788406
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.738282249856e-04
Iteration 0 residual: 0.00047382822498558743
Residual norms for tmp_ solve.
0 KSP Residual norm 4.738282249856e-04
1 KSP Residual norm 5.826298973936e-18
1 SNES Function norm 2.159718209414e-08
Iteration 1 residual: 2.1597182094140645e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.159718209414e-08
1 KSP Residual norm 9.688299211172e-20
2 SNES Function norm 1.974318581592e-12
Iteration 2 residual: 1.9743185815918794e-12
F_reac = -0.008406093657079079
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 351.0 is 0.0019435922479673889
At growth time 351.00, growth rate is 1.00006300327164
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.720011604678e-04
Iteration 0 residual: 0.00047200116046780186
Residual norms for tmp_ solve.
0 KSP Residual norm 4.720011604678e-04
1 KSP Residual norm 5.951199824579e-18
1 SNES Function norm 2.143095786684e-08
Iteration 1 residual: 2.143095786683789e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.143095786684e-08
1 KSP Residual norm 9.779061151480e-20
2 SNES Function norm 1.917733550309e-12
Iteration 2 residual: 1.9177335503089578e-12
F_reac = -0.008440061807434654
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 352.0 is 0.001943714521825729
At growth time 352.00, growth rate is 1.0000627600953547
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.701780884907e-04
Iteration 0 residual: 0.00047017808849073576
Residual norms for tmp_ solve.
0 KSP Residual norm 4.701780884907e-04
1 KSP Residual norm 5.739217287523e-18
1 SNES Function norm 2.126573876008e-08
Iteration 1 residual: 2.1265738760078844e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.126573876008e-08
1 KSP Residual norm 9.410385155800e-20
2 SNES Function norm 1.862737065892e-12
Iteration 2 residual: 1.8627370658921818e-12
F_reac = -0.008473900230701015
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 353.0 is 0.00194383633140559
At growth time 353.00, growth rate is 1.000062517465631
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.683591261545e-04
Iteration 0 residual: 0.0004683591261544927
Residual norms for tmp_ solve.
0 KSP Residual norm 4.683591261545e-04
1 KSP Residual norm 6.066861653016e-18
1 SNES Function norm 2.110153064127e-08
Iteration 1 residual: 2.1101530641267523e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.110153064127e-08
1 KSP Residual norm 8.795245862653e-20
2 SNES Function norm 1.809879335496e-12
Iteration 2 residual: 1.8098793354957397e-12
F_reac = -0.00850760920568245
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 354.0 is 0.0019439576776794521
At growth time 354.00, growth rate is 1.0000622753967283
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.665443801702e-04
Iteration 0 residual: 0.00046654438017024207
Residual norms for tmp_ solve.
0 KSP Residual norm 4.665443801702e-04
1 KSP Residual norm 5.638010780507e-18
1 SNES Function norm 2.093833947863e-08
Iteration 1 residual: 2.0938339478632902e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.093833947863e-08
1 KSP Residual norm 8.893709364082e-20
2 SNES Function norm 1.758434357668e-12
Iteration 2 residual: 1.7584343576682936e-12
F_reac = -0.008541189018985477
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 355.0 is 0.0019440785616480398
At growth time 355.00, growth rate is 1.0000620339016446
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.647339478015e-04
Iteration 0 residual: 0.00046473394780152693
Residual norms for tmp_ solve.
0 KSP Residual norm 4.647339478015e-04
1 KSP Residual norm 5.654959871788e-18
1 SNES Function norm 2.077616842242e-08
Iteration 1 residual: 2.0776168422423742e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.077616842242e-08
1 KSP Residual norm 8.687958537107e-20
2 SNES Function norm 1.708885279652e-12
Iteration 2 residual: 1.708885279652327e-12
F_reac = -0.008574639964321602
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 356.0 is 0.0019441989843379341
At growth time 356.00, growth rate is 1.0000617929922322
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.629279177241e-04
Iteration 0 residual: 0.0004629279177240778
Residual norms for tmp_ solve.
0 KSP Residual norm 4.629279177241e-04
1 KSP Residual norm 5.717833398099e-18
1 SNES Function norm 2.061502164398e-08
Iteration 1 residual: 2.0615021643983648e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.061502164398e-08
1 KSP Residual norm 8.885557379065e-20
2 SNES Function norm 1.660663663796e-12
Iteration 2 residual: 1.6606636637955967e-12
F_reac = -0.008607962341910887
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 357.0 is 0.0019443189467993217
At growth time 357.00, growth rate is 1.0000615526793004
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.611263707983e-04
Iteration 0 residual: 0.0004611263707983068
Residual norms for tmp_ solve.
0 KSP Residual norm 4.611263707983e-04
1 KSP Residual norm 5.713928422717e-18
1 SNES Function norm 2.045490091793e-08
Iteration 1 residual: 2.045490091793312e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.045490091793e-08
1 KSP Residual norm 8.604760354424e-20
2 SNES Function norm 1.614193599022e-12
Iteration 2 residual: 1.614193599022132e-12
F_reac = -0.008641156457910852
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.21 seconds.
CSA at time 358.0 is 0.001944438450103988
At growth time 358.00, growth rate is 1.0000613129727087
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.593293807830e-04
Iteration 0 residual: 0.0004593293807829515
Residual norms for tmp_ solve.
0 KSP Residual norm 4.593293807830e-04
1 KSP Residual norm 5.563075869039e-18
1 SNES Function norm 2.029580867303e-08
Iteration 1 residual: 2.0295808673031304e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.029580867303e-08
1 KSP Residual norm 8.346300183630e-20
2 SNES Function norm 1.569104230580e-12
Iteration 2 residual: 1.5691042305802027e-12
F_reac = -0.008674222623902852
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 359.0 is 0.0019445574953434737
At growth time 359.00, growth rate is 1.000061073881451
Applying Robin BC with k=100000.0.
Using 'robin' clamp type.
Starting simulation...
==================================================
Solving for activation level 0.0
0 SNES Function norm 4.575370149377e-04
Iteration 0 residual: 0.0004575370149376565
Residual norms for tmp_ solve.
0 KSP Residual norm 4.575370149377e-04
1 KSP Residual norm 5.770564975387e-18
1 SNES Function norm 2.013774586154e-08
Iteration 1 residual: 2.013774586153857e-08
Residual norms for tmp_ solve.
0 KSP Residual norm 2.013774586154e-08
1 KSP Residual norm 8.440320806835e-20
2 SNES Function norm 1.525087619814e-12
Iteration 2 residual: 1.5250876198143292e-12
F_reac = -0.008707161156430622
Output written for activation level 0.000 to ../results/demos/coupled_growth/output_pp.bp
Simulation finished in 2.22 seconds.
CSA at time 360.0 is 0.0019446760836273984
Output written for time 360.00 s to <dolfinx.io.utils.VTXWriter object at 0x7f91ad1ae240>
Output written for time 360.00 s to ../results/demos/coupled_growth/u_growth_pp.bp
Event finished. New CSA: 1.9447e-03. Feedback scalar: 0.968
--- Growth simulation finished in 677.97 seconds ---
Simulation results saved to ../results/demos/coupled_growth
Simulation complete.
Post-processing and visualization#
We generate a summary plot showing the dynamics of all system variables:
The signaling states (IGF1, AKT, FOXO, mTOR, myofibrils N)
The homeostatic feedback (\(k_M\) decreases as the muscle grows)
The macroscopic hypertrophy (CSA and Volume increasing over time)
ode_results = pd.read_csv(results_dir / "ode_results.csv")
growth_results = pd.read_csv(results_dir / "growth_results.csv")
params = exercise_model.params
t_days = ode_results.t / 24
t_growth = growth_results.t / 24
# Normalize CSA and Volume
csa_norm = growth_results.csa / growth_results.csa[0]
volume_norm = growth_results.volume / growth_results.volume[0]
# Configuration: (x_data, y_data, color, label, ylabel, threshold_value)
plot_cfg = [
(t_days, ode_results.igf1, "#D8CC39", "IGF1", "IGF1", None),
(t_days, ode_results.akt, "#46A0D4", "AKT", "AKT", None),
(t_days, ode_results.foxo, "#BF4A00", "FOXO", "FOXO", params["x3_th"]),
(t_days, ode_results.mtor, "#00885F", "mTOR", "mTOR", params["x4_th"]),
(t_days, ode_results.z, "#882400", "Myofibrils N", "Myofibrils N", None),
(t_growth, growth_results.k1, "black", r"$k_M$", r"$k_M$ ($h^{-1}$)", None),
(t_growth, csa_norm, "purple", "CSA", "Norm. CSA", None),
(t_growth, volume_norm, "navy", "Volume", "Norm. Vol", None),
]
fig, axs = plt.subplots(4, 2, figsize=(7, 7), sharex=True)
for ax, (x, y, color, label, ylabel, thresh) in zip(axs.flatten(), plot_cfg):
ax.plot(x, y, color=color, label=label)
if thresh:
ax.axhline(thresh, color="gray", linestyle=":", alpha=0.7, label="Threshold")
ax.legend()
ax.set_xlabel("Time (days)")
ax.set_ylabel(ylabel)
ax.grid(True, linestyle=":", alpha=0.4)
plt.tight_layout()
plt.show()
We generate 3D visualizations of the muscle geometry deforming over time due to growth. The post-processing step creates a series of snapshots that are combined into an animation.
postprocess_from_file(
output_dir=results_dir,
conf_file=material_config,
freq=2, # only process every 2nd time point
warp_scale=10.0, # exaggerate deformation 10x for visualization
camera_pos="idealized-fusiform",
)
Initializing Post-Processor...
Reading mesh and facet tags from file...
Starting data processing...
- Processing frame 1/44...
- Processing frame 2/44...
- Processing frame 3/44...
- Processing frame 4/44...
- Processing frame 5/44...
- Processing frame 6/44...
- Processing frame 7/44...
- Processing frame 8/44...
- Processing frame 9/44...
- Processing frame 10/44...
- Processing frame 11/44...
- Processing frame 12/44...
- Processing frame 13/44...
- Processing frame 14/44...
- Processing frame 15/44...
- Processing frame 16/44...
- Processing frame 17/44...
- Processing frame 18/44...
- Processing frame 19/44...
- Processing frame 20/44...
- Processing frame 21/44...
- Processing frame 22/44...
- Processing frame 23/44...
- Processing frame 24/44...
- Processing frame 25/44...
- Processing frame 26/44...
- Processing frame 27/44...
- Processing frame 28/44...
- Processing frame 29/44...
- Processing frame 30/44...
- Processing frame 31/44...
- Processing frame 32/44...
- Processing frame 33/44...
- Processing frame 34/44...
- Processing frame 35/44...
- Processing frame 36/44...
- Processing frame 37/44...
- Processing frame 38/44...
- Processing frame 39/44...
- Processing frame 40/44...
- Processing frame 41/44...
- Processing frame 42/44...
- Processing frame 43/44...
- Processing frame 44/44...
Data processing complete. Global limits found:
- displacement: [0.0000e+00, 2.0027e-04]
Generating 3D plot frames from cached data...
- Plotting frame 1/44 (Time: 2.000)...
- Plotting frame 3/44 (Time: 22.000)...
- Plotting frame 5/44 (Time: 42.000)...
- Plotting frame 7/44 (Time: 50.000)...
- Plotting frame 9/44 (Time: 70.000)...
- Plotting frame 11/44 (Time: 90.000)...
- Plotting frame 13/44 (Time: 98.000)...
- Plotting frame 15/44 (Time: 118.000)...
- Plotting frame 17/44 (Time: 138.000)...
- Plotting frame 19/44 (Time: 146.000)...
- Plotting frame 21/44 (Time: 166.000)...
- Plotting frame 23/44 (Time: 186.000)...
- Plotting frame 25/44 (Time: 194.000)...
- Plotting frame 27/44 (Time: 214.000)...
- Plotting frame 29/44 (Time: 234.000)...
- Plotting frame 31/44 (Time: 242.000)...
- Plotting frame 33/44 (Time: 262.000)...
- Plotting frame 35/44 (Time: 282.000)...
- Plotting frame 37/44 (Time: 290.000)...
- Plotting frame 39/44 (Time: 310.000)...
- Plotting frame 41/44 (Time: 330.000)...
- Plotting frame 43/44 (Time: 350.000)...
- Plotting final frame 44/44 (Time: 360.000)...
Creating final media files (GIF and MP4)...
- Creating GIF for 'displacement'...
IMAGEIO FFMPEG_WRITER WARNING: input image is not divisible by macro_block_size=16, resizing from (1830, 2560) to (1840, 2560) to ensure video compatibility with most codecs and players. To prevent resizing, make your input image divisible by the macro_block_size or set the macro_block_size to 1 (risking incompatibility).
- Creating MP4 for 'displacement'...
Post-processing complete.
The animation below shows the muscle thickening over the 15-day protocol. The warp scale is set to 10x to better visualize the deformation.
In accordance with our chosen growth tensor, the muscle thickens (increased CSA) while the overall length remains approximately constant.
